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3P1T
Asym. Unit
Info
Asym.Unit (438 KB)
Biol.Unit 1 (217 KB)
Biol.Unit 2 (217 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE AMINOTRANSFERASE (BPSL1724) FROM BURKHOLDERIA PSEUDOMALLEI K96243 AT 2.60 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
30 Sep 10 (Deposition) - 20 Oct 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Plp-Dependent Transferase-Like, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2. 60 A Resolution
To Be Published
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Hetero Components
(4, 38)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
4a: L(+)-TARTARIC ACID (TLAa)
4b: L(+)-TARTARIC ACID (TLAb)
4c: L(+)-TARTARIC ACID (TLAc)
4d: L(+)-TARTARIC ACID (TLAd)
4e: L(+)-TARTARIC ACID (TLAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
4
Ligand/Ion
SULFATE ION
4
TLA
5
Ligand/Ion
L(+)-TARTARIC ACID
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:258 , ARG A:265 , SER A:273 , EDO A:346
BINDING SITE FOR RESIDUE SO4 A 338
02
AC2
SOFTWARE
PHE A:22 , ASN A:145 , TYR A:172 , LYS A:197 , LYS A:301 , PHE A:306 , ARG A:313 , HOH A:897 , HOH A:908 , TYR B:47
BINDING SITE FOR RESIDUE TLA A 343
03
AC3
SOFTWARE
ARG A:257 , ARG A:258 , SER A:274 , SO4 A:338
BINDING SITE FOR RESIDUE EDO A 346
04
AC4
SOFTWARE
ASN A:69 , SER A:213 , GLU A:214
BINDING SITE FOR RESIDUE EDO A 349
05
AC5
SOFTWARE
ALA A:285 , GLU A:287 , ARG A:288 , HOH A:677 , HOH A:829
BINDING SITE FOR RESIDUE EDO A 350
06
AC6
SOFTWARE
ARG B:258 , ARG B:265 , SER B:273 , TLA B:342 , HOH B:916
BINDING SITE FOR RESIDUE SO4 B 339
07
AC7
SOFTWARE
ASN B:145 , LYS B:301 , ARG B:313 , HOH B:909 , HOH B:911
BINDING SITE FOR RESIDUE SO4 B 340
08
AC8
SOFTWARE
ARG B:257 , ARG B:258 , ALA B:261 , SER B:273 , SER B:274 , GLU B:275 , SO4 B:339 , HOH B:916
BINDING SITE FOR RESIDUE TLA B 342
09
AC9
SOFTWARE
ASN B:283 , GLY B:286 , ASP B:302 , HIS B:309 , HIS B:310
BINDING SITE FOR RESIDUE EDO B 347
10
BC1
SOFTWARE
GLU A:115 , SER B:64
BINDING SITE FOR RESIDUE EDO B 351
11
BC2
SOFTWARE
ILE B:76 , PHE B:99 , ASN B:145 , ASP B:169 , THR B:171
BINDING SITE FOR RESIDUE EDO B 353
12
BC3
SOFTWARE
ALA B:285 , GLU B:287 , ARG B:288 , ARG B:291
BINDING SITE FOR RESIDUE EDO B 356
13
BC4
SOFTWARE
PHE C:22 , ASN C:145 , LYS C:197 , ARG C:205 , LYS C:301 , PHE C:306 , ARG C:313 , HOH C:913 , HOH C:915 , TYR D:47
BINDING SITE FOR RESIDUE TLA C 344
14
BC5
SOFTWARE
ARG C:257 , ARG C:258 , ARG C:265 , SER C:273 , SER C:274
BINDING SITE FOR RESIDUE TLA C 345
15
BC6
SOFTWARE
GLY C:286 , GLU C:287 , LEU C:290 , ASP C:302 , HIS C:309 , HIS C:310
BINDING SITE FOR RESIDUE EDO C 348
16
BC7
SOFTWARE
GLU C:282
BINDING SITE FOR RESIDUE EDO C 352
17
BC8
SOFTWARE
ALA C:285 , GLU C:287 , ARG C:288 , HIS C:310 , HOH C:870 , ARG D:54 , LYS D:58 , GLU D:237
BINDING SITE FOR RESIDUE EDO C 357
18
BC9
SOFTWARE
ARG D:258 , ARG D:265 , SER D:273 , TLA D:341
BINDING SITE FOR RESIDUE SO4 D 337
19
CC1
SOFTWARE
ARG D:257 , ARG D:258 , SER D:273 , SER D:274 , GLU D:275 , SO4 D:337
BINDING SITE FOR RESIDUE TLA D 341
20
CC2
SOFTWARE
PHE D:99 , ASN D:145 , ASP D:169 , THR D:171
BINDING SITE FOR RESIDUE EDO D 354
21
CC3
SOFTWARE
ALA D:285 , GLU D:287 , ARG D:288 , ARG D:291
BINDING SITE FOR RESIDUE EDO D 358
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3p1ta_ (A:)
1b: SCOP_d3p1tb_ (B:)
1c: SCOP_d3p1tc_ (C:)
1d: SCOP_d3p1td_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Burkholderia pseudomallei [TaxId: 28450]
(3)
1a
d3p1ta_
A:
1b
d3p1tb_
B:
1c
d3p1tc_
C:
1d
d3p1td_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_1_2_3p1tD01 (D:17-329)
1b: PFAM_Aminotran_1_2_3p1tD02 (D:17-329)
1c: PFAM_Aminotran_1_2_3p1tD03 (D:17-329)
1d: PFAM_Aminotran_1_2_3p1tD04 (D:17-329)
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Clans
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Organisms
(
)
(
)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_1_2
(77)
Burkholderia pseudomallei (Pseudomonas pseudomallei)
(1)
1a
Aminotran_1_2-3p1tD01
D:17-329
1b
Aminotran_1_2-3p1tD02
D:17-329
1c
Aminotran_1_2-3p1tD03
D:17-329
1d
Aminotran_1_2-3p1tD04
D:17-329
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