Chain A from PDB Type:PROTEIN Length:213
aligned with Q87TP2_VIBPA | Q87TP2 from UniProtKB/TrEMBL Length:330
Alignment length:215
120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320
Q87TP2_VIBPA 111 PQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAKRIE 325
SCOP domains d3oxna_ A: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee........eeeeeee...eeeeee..hhhhhh..hhhhhhh.eeee...hhhhhhhhhhhh......eeeee...hhhhhhhh--...eeeeehhhhhhhhhhh.eeee..........eeeeee.hhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3oxn A 111 PQQCDQTFTIATTDYAmQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEmSLDDYLSHPHAmIAISDGVKALIEQALIDKPQRKmVLRAYHLEAALAIV--LPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSmIWHARCEHSPAQEWLRSVVREECSRLIAKRIE 325
120 |130 140 150 160 170 180 190 200 | 210 |220 230 240 250 | |260 270 280 290 | 300 310 320
127-MSE 205-MSE 217-MSE 240-MSE 254 | 293-MSE
257
Chain B from PDB Type:PROTEIN Length:215
aligned with Q87TP2_VIBPA | Q87TP2 from UniProtKB/TrEMBL Length:330
Alignment length:215
119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319
Q87TP2_VIBPA 110 DPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAKRI 324
SCOP domains d3oxnb_ B: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhh....eeee.........eeeeee...eeeeee..hhhhhh..hhhhhh...eee...hhhhhhhhhhhh.........ee...hhhhhhhhh....eeeeehhhhhhhhh...ee............eeeeehhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3oxn B 110 DPQQCDQTFTIATTDYAmQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEmSLDDYLSHPHAmIAISDGVKALIEQALIDKPQRKmVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSmIWHARCEHSPAQEWLRSVVREECSRLIAKRI 324
119 129 139 149 159 169 179 189 199 | 209 219 229 239| 249 259 269 279 289 | 299 309 319
127-MSE 205-MSE 217-MSE 240-MSE 293-MSE
Chain C from PDB Type:PROTEIN Length:213
aligned with Q87TP2_VIBPA | Q87TP2 from UniProtKB/TrEMBL Length:330
Alignment length:215
118 128 138 148 158 168 178 188 198 208 218 228 238 248 258 268 278 288 298 308 318
Q87TP2_VIBPA 109 FDPQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAKR 323
SCOP domains d3oxnc_ C: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhh..eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhh....eeee...--....eeeeeeee.eeeeee..hhhhh...hhhhhh...eeee..hhhhhhhhhhhh.......eeeee.....hhhhhh....eeeeehhhhhhhhh...eeeee.......eeeeeeehhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3oxn C 109 FDPQQCDQTFTIATTDYAmQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPT--VEPLRSEILGRVGVLCLLSKQHPLANQEmSLDDYLSHPHAmIAISDGVKALIEQALIDKPQRKmVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSmIWHARCEHSPAQEWLRSVVREECSRLIAKR 323
118 128 138 148 158 168 | 178 188 198 |208 218 228 238 | 248 258 268 278 288 | 298 308 318
127-MSE 174 | 205-MSE 217-MSE 240-MSE 293-MSE
177
Chain D from PDB Type:PROTEIN Length:212
aligned with Q87TP2_VIBPA | Q87TP2 from UniProtKB/TrEMBL Length:330
Alignment length:212
120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320
Q87TP2_VIBPA 111 PQQCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVREECSRLIAK 322
SCOP domains d3oxnd_ D: automated matches SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) -LysR_substrate-3oxnD01 D:112-317 ----- Pfam domains (1)
Pfam domains (2) -LysR_substrate-3oxnD02 D:112-317 ----- Pfam domains (2)
Pfam domains (3) -LysR_substrate-3oxnD03 D:112-317 ----- Pfam domains (3)
Pfam domains (4) -LysR_substrate-3oxnD04 D:112-317 ----- Pfam domains (4)
Sec.struct. author ......eeeeeehhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.........eeeeeeee.eeeeee..hhhhh...hhhhhhhh.eeee..hhhhhhhhhhhh.......eeeee.hhhhhhhhhh....eeeeehhhhhhhhhhhheeeee.......eeeeeeehhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3oxn D 111 PQQCDQTFTIATTDYAmQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGRVGVLCLLSKQHPLANQEmSLDDYLSHPHAmIAISDGVKALIEQALIDKPQRKmVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSmIWHARCEHSPAQEWLRSVVREECSRLIAK 322
120 |130 140 150 160 170 180 190 200 | 210 |220 230 240 250 260 270 280 290 | 300 310 320
127-MSE 205-MSE 217-MSE 240-MSE 293-MSE
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |