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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN SP_0782 (7-79) FROM STREPTOCOCCUS PNEUMONIAE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SPR104
 
Authors :  A. Kuzin, M. Abashidze, S. Lew, J. Seetharaman, P. Patel, R. Xiao, C. Cic D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  06 Aug 10  (Deposition) - 15 Sep 10  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, M. Abashidze, S. Lew, J. Seetharaman, P. Patel, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
X-Ray Crystal Structure Of Protein Sp_0782 (7-79) From Streptococcus Pneumoniae. Northeast Structural Genomics Consortium Target Spr104
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SP_0782
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2CIT1Ligand/IonCITRIC ACID
3MSE4Mod. Amino AcidSELENOMETHIONINE
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:5 , HOH A:101BINDING SITE FOR RESIDUE ACY A 103
2AC2SOFTWAREASN A:26 , TRP A:30 , ALA A:50 , GLY A:59 , LYS A:60 , HOH A:96BINDING SITE FOR RESIDUE CIT A 201
3AC3SOFTWARESER A:65 , GLU A:67 , THR B:13 , SER B:24 , SER B:38 , ASN B:40 , GLY B:41BINDING SITE FOR RESIDUE ACY B 102
4AC4SOFTWARELYS A:60 , ARG B:49 , LYS B:60 , GLY B:61 , ILE B:62 , THR B:63BINDING SITE FOR RESIDUE PEG B 1
5AC5SOFTWAREILE A:16 , GLU A:17 , THR B:71BINDING SITE FOR RESIDUE PEG B 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OBH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OBH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OBH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OBH)

(-) Exons   (0, 0)

(no "Exon" information available for 3OBH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
 aligned with A0A0H2UPA7_S | A0A0H2UPA7 from UniProtKB/TrEMBL  Length:79

    Alignment length:66
                                    21        31        41        51        61        71      
          A0A0H2UPA7_S   12 FTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFK 77
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.....eeeeeeeee.....eeeeeee......eeeeeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  3obh A 12 FTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKmGKGITLSNEEFQTmVDAFK 77
                                    21        31        41        51      | 61        71|     
                                                                         58-MSE        72-MSE 


Chain B from PDB  Type:PROTEIN  Length:67
 aligned with A0A0H2UPA7_S | A0A0H2UPA7 from UniProtKB/TrEMBL  Length:79

    Alignment length:67
                                    19        29        39        49        59        69       
          A0A0H2UPA7_S   10 AEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAF 76
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeee.....eeeeeeeee.....eeeeeee......eeeeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  3obh B 10 AEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKmGKGITLSNEEFQTmVDAF 76
                                    19        29        39        49        59        69  |    
                                                                           58-MSE        72-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OBH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OBH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OBH)

(-) Gene Ontology  (0, 0)

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        A0A0H2UPA7_S | A0A0H2UPA7: 2l3a 4g06

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