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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN SP_0782 (7-79) FROM STREPTOCOCCUS PNEUMONIAE COMPLEXED WITH SSDNA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET SPR104
 
Authors :  A. P. Kuzin, M. Su, J. Seetharaman, P. Patel, R. Xiao, C. Ciccosanti, D. L J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northe Structural Genomics Consortium (Nesg)
Date :  09 Jul 12  (Deposition) - 25 Jul 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium (Nesg), Ssdna, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, M. Su, J. Seetharaman, P. Patel, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Spr104
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SP_0782
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1DT2Ligand/IonTHYMIDINE-5'-MONOPHOSPHATE
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:12 , LYS A:45 , ARG A:49 , MSE A:58 , LYS A:60 , DT A:102BINDING SITE FOR RESIDUE DT A 101
2AC2SOFTWAREPHE A:12 , PHE A:39 , ARG A:49 , LYS A:60 , GLY A:61 , DT A:101 , GLU B:27BINDING SITE FOR RESIDUE DT A 102
3AC3SOFTWAREHIS B:19 , THR B:22BINDING SITE FOR RESIDUE PEG B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G06)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G06)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G06)

(-) Exons   (0, 0)

(no "Exon" information available for 4G06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee......eeeeeeeee.....eeeeeee..........eeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  4g06 A 12 FTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKmGKGITLSNEEFQTmVDAFKGN 79
                                    21        31        41        51      | 61        71|       
                                                                         58-MSE        72-MSE   


Chain B from PDB  Type:PROTEIN  Length:68
                                                                                                   
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.....eeeeeeeee.....eeeeeee...........eehhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  4g06 B 11 EFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKmGKGITLSNEEFQTmVDAFKG 78
                                    20        30        40        50       |60        70 |      
                                                                          58-MSE        72-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G06)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G06)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G06)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4G06)

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  Cis Peptide Bonds
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  4g06
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  A0A0H2UPA7_S | A0A0H2UPA7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H2UPA7_S | A0A0H2UPA7: 2l3a 3obh

(-) Related Entries Specified in the PDB File

3obh 100% HOMOLOGY RELATED ID: NESG-SPR104 RELATED DB: PDB RELATED ID: NESG-SPR104 RELATED DB: TARGETTRACK