Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA GUANIDINOBUTYRASE
 
Authors :  S. J. Lee, H. S. Kim, D. J. Kim, H. J. Yoon, K. H. Kim, J. Y. Yoon, J. Y. Jang, H S. W. Suh
Date :  16 Jun 10  (Deposition) - 01 Jun 11  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Pa1421, Guanidinobutyrase, Gbua, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Lee, D. J. Kim, H. S. Kim, B. I. Lee, H. J. Yoon, J. Y. Yoon, K. H. Kim, J. Y. Jang, H. N. Im, D. R. An, J. S. Song, H. J. Kim, S. W. Suh
Crystal Structures Of Pseudomonas Aeruginosa Guanidinobutyrase And Guanidinopropionase, Members Of The Ureohydrolase Superfamily
J. Struct. Biol. V. 175 329 2011
PubMed-ID: 21600989  |  Reference-DOI: 10.1016/J.JSB.2011.05.002

(-) Compounds

Molecule 1 - GUANIDINOBUTYRASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.3.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GBUA, PA1421
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 54)

Asymmetric/Biological Unit (2, 54)
No.NameCountTypeFull Name
1MLY42Mod. Amino AcidN-DIMETHYL-LYSINE
2MN12Ligand/IonMANGANESE (II) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:129 , ASP A:152 , ASP A:156 , ASP A:243 , HOH A:624 , HOH A:1061 , MN A:1602BINDING SITE FOR RESIDUE MN A 1601
02AC2SOFTWAREASP A:152 , HIS A:154 , ASP A:243 , ASP A:245 , HOH A:624 , MN A:1601BINDING SITE FOR RESIDUE MN A 1602
03AC3SOFTWAREHIS B:129 , ASP B:152 , ASP B:156 , ASP B:243 , HOH B:791 , HOH B:1060 , MN B:1604BINDING SITE FOR RESIDUE MN B 1603
04AC4SOFTWAREASP B:152 , HIS B:154 , ASP B:243 , ASP B:245 , HOH B:791 , MN B:1603BINDING SITE FOR RESIDUE MN B 1604
05AC5SOFTWAREHIS C:129 , ASP C:152 , ASP C:156 , ASP C:243 , HOH C:1007 , HOH C:1059 , MN C:1606BINDING SITE FOR RESIDUE MN C 1605
06AC6SOFTWAREASP C:152 , HIS C:154 , ASP C:243 , ASP C:245 , HOH C:1007 , MN C:1605BINDING SITE FOR RESIDUE MN C 1606
07AC7SOFTWAREHIS D:129 , ASP D:152 , ASP D:156 , ASP D:243 , HOH D:1040 , HOH D:1058 , MN D:1608BINDING SITE FOR RESIDUE MN D 1607
08AC8SOFTWAREASP D:152 , HIS D:154 , ASP D:243 , ASP D:245 , HOH D:1040 , MN D:1607BINDING SITE FOR RESIDUE MN D 1608
09AC9SOFTWAREHIS E:129 , ASP E:152 , ASP E:156 , ASP E:243 , HOH E:1033 , HOH E:1057 , MN E:1610BINDING SITE FOR RESIDUE MN E 1609
10BC1SOFTWAREASP E:152 , HIS E:154 , ASP E:243 , ASP E:245 , HOH E:1033 , MN E:1609BINDING SITE FOR RESIDUE MN E 1610
11BC2SOFTWAREHIS F:129 , ASP F:152 , ASP F:156 , ASP F:243 , HOH F:1034 , HOH F:1056 , MN F:1612BINDING SITE FOR RESIDUE MN F 1611
12BC3SOFTWAREASP F:152 , HIS F:154 , ASP F:243 , ASP F:245 , HOH F:1034 , MN F:1611BINDING SITE FOR RESIDUE MN F 1612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NIO)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly A:126 -Gly A:127
2Gly B:126 -Gly B:127
3Gly C:126 -Gly C:127
4Gly D:126 -Gly D:127
5Gly E:126 -Gly E:127
6Gly F:126 -Gly F:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NIO)

(-) PROSITE Motifs  (2, 12)

Asymmetric/Biological Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARGINASE_2PS51409 Arginase family profile.GBUA_PSEAE25-319
 
 
 
 
 		  6A:25-319
B:25-319
C:25-319
D:25-319
E:25-319
F:25-319
2ARGINASE_1PS01053 Arginase family signature.GBUA_PSEAE241-262
 
 
 
 
 		  6A:241-262
B:241-262
C:241-262
D:241-262
E:241-262
F:241-262

(-) Exons   (0, 0)

(no "Exon" information available for 3NIO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3nioa_ A: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhhhhh..ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh....hhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: A:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio A   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3niob_ B: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhhhhh..ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh....hhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: B:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio B   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3nioc_ C: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhh.....ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh....hhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: C:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio C   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3niod_ D: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhhhhh..ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh....hhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: D:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio D   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY                                                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3nioe_ E: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhhhhh..ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh....hhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: E:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio E   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY                                                                                                                                                                          


Chain F from PDB  Type:PROTEIN  Length:316
 aligned with GBUA_PSEAE | Q9I3S3 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:316
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313      
           GBUA_PSEAE     4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
               SCOP domains d3niof_ F: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh....hhhhhh...eeeee...........hhhhhhhhhhhhhhhh..ee.....hhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh.eeeeee..................hhhhhhhhh..eeeeeeeeeee..ee..hhhhhhhhhhh.eeee.hhh......hhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhh....eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------ARGINASE_2  PDB: F:25-319 UniProt: 25-319                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            --------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nio F   4 NLHQPLGGNEMPRFGGIATMMRLPHVQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIkKkHGkVGLVHVDAHADVNDHMFGEkIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRkQGFRVVQAEECWHkSLEPLMAEVREkVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
                                    13        23        33        43        53        63        73        83        93       103       113       123       133      |143 |     153       163 |     173       183       193       203  |    213      |223       233       243       253       263       273       283       293       303       313      
                                                                                                                                                                  140-MLY|                 165-MLY                                  206-MLY       220-MLY     232-MLY                                                                                   
                                                                                                                                                                    142-MLY                                                                                                                                                                             
                                                                                                                                                                       145-MLY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NIO)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (GBUA_PSEAE | Q9I3S3)
molecular function
    GO:0047971    guanidinobutyrase activity    Catalysis of the reaction: 4-guanidinobutanoate + H(2)O = 4-aminobutanoate + urea.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016813    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines    Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:126 - Gly A:127   [ RasMol ]  
    Gly B:126 - Gly B:127   [ RasMol ]  
    Gly C:126 - Gly C:127   [ RasMol ]  
    Gly D:126 - Gly D:127   [ RasMol ]  
    Gly E:126 - Gly E:127   [ RasMol ]  
    Gly F:126 - Gly F:127   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3nio
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GBUA_PSEAE | Q9I3S3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.5.3.7
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GBUA_PSEAE | Q9I3S3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3NIO)

(-) Related Entries Specified in the PDB File

3nip 3niq