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3NIO
Asym. Unit
Info
Asym.Unit (318 KB)
Biol.Unit 1 (308 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA GUANIDINOBUTYRASE
Authors
:
S. J. Lee, H. S. Kim, D. J. Kim, H. J. Yoon, K. H. Kim, J. Y. Yoon, J. Y. Jang, H S. W. Suh
Date
:
16 Jun 10 (Deposition) - 01 Jun 11 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Pa1421, Guanidinobutyrase, Gbua, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Lee, D. J. Kim, H. S. Kim, B. I. Lee, H. J. Yoon, J. Y. Yoon, K. H. Kim, J. Y. Jang, H. N. Im, D. R. An, J. S. Song, H. J. Kim, S. W. Suh
Crystal Structures Of Pseudomonas Aeruginosa Guanidinobutyrase And Guanidinopropionase, Members Of The Ureohydrolase Superfamily
J. Struct. Biol. V. 175 329 2011
[
close entry info
]
Hetero Components
(2, 54)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1aa: N-DIMETHYL-LYSINE (MLYaa)
1ab: N-DIMETHYL-LYSINE (MLYab)
1ac: N-DIMETHYL-LYSINE (MLYac)
1ad: N-DIMETHYL-LYSINE (MLYad)
1ae: N-DIMETHYL-LYSINE (MLYae)
1af: N-DIMETHYL-LYSINE (MLYaf)
1ag: N-DIMETHYL-LYSINE (MLYag)
1ah: N-DIMETHYL-LYSINE (MLYah)
1ai: N-DIMETHYL-LYSINE (MLYai)
1aj: N-DIMETHYL-LYSINE (MLYaj)
1ak: N-DIMETHYL-LYSINE (MLYak)
1al: N-DIMETHYL-LYSINE (MLYal)
1am: N-DIMETHYL-LYSINE (MLYam)
1an: N-DIMETHYL-LYSINE (MLYan)
1ao: N-DIMETHYL-LYSINE (MLYao)
1ap: N-DIMETHYL-LYSINE (MLYap)
1b: N-DIMETHYL-LYSINE (MLYb)
1c: N-DIMETHYL-LYSINE (MLYc)
1d: N-DIMETHYL-LYSINE (MLYd)
1e: N-DIMETHYL-LYSINE (MLYe)
1f: N-DIMETHYL-LYSINE (MLYf)
1g: N-DIMETHYL-LYSINE (MLYg)
1h: N-DIMETHYL-LYSINE (MLYh)
1i: N-DIMETHYL-LYSINE (MLYi)
1j: N-DIMETHYL-LYSINE (MLYj)
1k: N-DIMETHYL-LYSINE (MLYk)
1l: N-DIMETHYL-LYSINE (MLYl)
1m: N-DIMETHYL-LYSINE (MLYm)
1n: N-DIMETHYL-LYSINE (MLYn)
1o: N-DIMETHYL-LYSINE (MLYo)
1p: N-DIMETHYL-LYSINE (MLYp)
1q: N-DIMETHYL-LYSINE (MLYq)
1r: N-DIMETHYL-LYSINE (MLYr)
1s: N-DIMETHYL-LYSINE (MLYs)
1t: N-DIMETHYL-LYSINE (MLYt)
1u: N-DIMETHYL-LYSINE (MLYu)
1v: N-DIMETHYL-LYSINE (MLYv)
1w: N-DIMETHYL-LYSINE (MLYw)
1x: N-DIMETHYL-LYSINE (MLYx)
1y: N-DIMETHYL-LYSINE (MLYy)
1z: N-DIMETHYL-LYSINE (MLYz)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
42
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
MN
12
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:129 , ASP A:152 , ASP A:156 , ASP A:243 , HOH A:624 , HOH A:1061 , MN A:1602
BINDING SITE FOR RESIDUE MN A 1601
02
AC2
SOFTWARE
ASP A:152 , HIS A:154 , ASP A:243 , ASP A:245 , HOH A:624 , MN A:1601
BINDING SITE FOR RESIDUE MN A 1602
03
AC3
SOFTWARE
HIS B:129 , ASP B:152 , ASP B:156 , ASP B:243 , HOH B:791 , HOH B:1060 , MN B:1604
BINDING SITE FOR RESIDUE MN B 1603
04
AC4
SOFTWARE
ASP B:152 , HIS B:154 , ASP B:243 , ASP B:245 , HOH B:791 , MN B:1603
BINDING SITE FOR RESIDUE MN B 1604
05
AC5
SOFTWARE
HIS C:129 , ASP C:152 , ASP C:156 , ASP C:243 , HOH C:1007 , HOH C:1059 , MN C:1606
BINDING SITE FOR RESIDUE MN C 1605
06
AC6
SOFTWARE
ASP C:152 , HIS C:154 , ASP C:243 , ASP C:245 , HOH C:1007 , MN C:1605
BINDING SITE FOR RESIDUE MN C 1606
07
AC7
SOFTWARE
HIS D:129 , ASP D:152 , ASP D:156 , ASP D:243 , HOH D:1040 , HOH D:1058 , MN D:1608
BINDING SITE FOR RESIDUE MN D 1607
08
AC8
SOFTWARE
ASP D:152 , HIS D:154 , ASP D:243 , ASP D:245 , HOH D:1040 , MN D:1607
BINDING SITE FOR RESIDUE MN D 1608
09
AC9
SOFTWARE
HIS E:129 , ASP E:152 , ASP E:156 , ASP E:243 , HOH E:1033 , HOH E:1057 , MN E:1610
BINDING SITE FOR RESIDUE MN E 1609
10
BC1
SOFTWARE
ASP E:152 , HIS E:154 , ASP E:243 , ASP E:245 , HOH E:1033 , MN E:1609
BINDING SITE FOR RESIDUE MN E 1610
11
BC2
SOFTWARE
HIS F:129 , ASP F:152 , ASP F:156 , ASP F:243 , HOH F:1034 , HOH F:1056 , MN F:1612
BINDING SITE FOR RESIDUE MN F 1611
12
BC3
SOFTWARE
ASP F:152 , HIS F:154 , ASP F:243 , ASP F:245 , HOH F:1034 , MN F:1611
BINDING SITE FOR RESIDUE MN F 1612
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_2 (A:25-319,B:25-319,C:25-319,D:25-31...)
2: ARGINASE_1 (A:241-262,B:241-262,C:241-262,D:24...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_2
PS51409
Arginase family profile.
GBUA_PSEAE
25-319
6
A:25-319
B:25-319
C:25-319
D:25-319
E:25-319
F:25-319
2
ARGINASE_1
PS01053
Arginase family signature.
GBUA_PSEAE
241-262
6
A:241-262
B:241-262
C:241-262
D:241-262
E:241-262
F:241-262
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3nioa_ (A:)
1b: SCOP_d3niob_ (B:)
1c: SCOP_d3nioc_ (C:)
1d: SCOP_d3niod_ (D:)
1e: SCOP_d3nioe_ (E:)
1f: SCOP_d3niof_ (F:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Pseudomonas aeruginosa [TaxId: 208964]
(3)
1a
d3nioa_
A:
1b
d3niob_
B:
1c
d3nioc_
C:
1d
d3niod_
D:
1e
d3nioe_
E:
1f
d3niof_
F:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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