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(-) Description

Title :  CRYSTAL STRUCTURE OF BH2092 PROTEIN FROM BACILLUS HALODURANS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BHR228F
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J Northeast Structural Genomics Consortium (Nesg)
Date :  14 Jun 10  (Deposition) - 11 Aug 10  (Release) - 11 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D  (3x)
Biol. Unit 3:  E  (3x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Bhr228F
To Be Published 2010
PubMed: search

(-) Compounds

Molecule 1 - BH2092 PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BH2092
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: C-125

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): ABC  
Biological Unit 2 (3x):    D 
Biological Unit 3 (3x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:128 , LYS B:128 , LYS C:128BINDING SITE FOR RESIDUE CL A 201
2AC2SOFTWARELYS C:75 , LYS E:117BINDING SITE FOR RESIDUE CL C 201
3AC3SOFTWAREASP D:56 , ALA D:57 , PRO D:72BINDING SITE FOR RESIDUE CL D 201
4AC4SOFTWARELYS E:128BINDING SITE FOR RESIDUE CL E 201

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:94 -A:99
2B:94 -B:99
3C:94 -C:99
4D:94 -D:99
5E:94 -E:99

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NHV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NHV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NHV)

(-) Exons   (0, 0)

(no "Exon" information available for 3NHV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:134
                                    26        36        46        56        66        76        86        96       106       116       126       136       146    
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKE 150
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheeehhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeeeehhhhhhhhh.......hhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nhv A  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNmKKE 150
                                    26        36        46        56        66        76        86        96       106       116       126       136       146|   
                                    26-MSE                                                                                                                  147-MSE


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:142
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156  
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESKNKKSLD 158
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eeehhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeeeehhhhhhhhh.......hhhhh..........-----.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nhv B  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNmKKES-----LE 153
                                    26        36        46        56        66        76        86        96       106       116       126       136       146|   |    -| 
                                    26-MSE                                                                                                                  147-MSE   152 


Chain C from PDB  Type:PROTEIN  Length:135
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:135
                                    25        35        45        55        65        75        85        95       105       115       125       135       145     
         Q9KB42_BACHD    16 ANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKE 150
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhheehhhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh.......hhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nhv C  16 ANPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNmKKE 150
                                    25|       35        45        55        65        75        85        95       105       115       125       135       145 |   
                                     26-MSE                                                                                                                  147-MSE


Chain D from PDB  Type:PROTEIN  Length:134
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:134
                                    25        35        45        55        65        75        85        95       105       115       125       135       145    
         Q9KB42_BACHD    16 ANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKK 149
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.eehhhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh.......hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nhv D  16 ANPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNmKK 149
                                    25|       35        45        55        65        75        85        95       105       115       125       135       145 |  
                                     26-MSE                                                                                                                  147-MSE


Chain E from PDB  Type:PROTEIN  Length:133
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:133
                                    26        36        46        56        66        76        86        96       106       116       126       136       146   
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKK 149
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------Rhodanese-3nhvE01 E:39-129                                                                 -------------------- Pfam domains (1)
           Pfam domains (2) ----------------------Rhodanese-3nhvE02 E:39-129                                                                 -------------------- Pfam domains (2)
           Pfam domains (3) ----------------------Rhodanese-3nhvE03 E:39-129                                                                 -------------------- Pfam domains (3)
           Pfam domains (4) ----------------------Rhodanese-3nhvE04 E:39-129                                                                 -------------------- Pfam domains (4)
           Pfam domains (5) ----------------------Rhodanese-3nhvE05 E:39-129                                                                 -------------------- Pfam domains (5)
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhhh...eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh.......hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nhv E  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFWNmKK 149
                                    26        36        46        56        66        76        86        96       106       116       126       136       146|  
                                    26-MSE                                                                                                                  147-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NHV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NHV)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: Rhodanese] (33)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NHV)

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        Q9KB42_BACHD | Q9KB42: 3o3w

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