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(-) Description

Title :  CRYSTAL STRUCTURE OF BH2092 PROTEIN (RESIDUES 14-131) FROM BACILLUS HALODURANS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BHR228A
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosant J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J Northeast Structural Genomics Consortium (Nesg)
Date :  26 Jul 10  (Deposition) - 01 Sep 10  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Bh2092 Protein (Residues 14-131) From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr228A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH2092 PROTEIN
    Chains: A, B, C, D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PET 21-23C
    Fragment: SEQUENCE DATABASE RESIDUES 14-131
    Gene: BH2092
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665
    Strain: C-125

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): ABC      
Biological Unit 2 (1x):    DEF   
Biological Unit 3 (1x):       GHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3O3W)

(-) SS Bonds  (9, 9)

Asymmetric Unit
No.Residues
1A:94 -A:99
2B:94 -B:99
3C:94 -C:99
4D:94 -D:99
5E:94 -E:99
6F:94 -F:99
7G:94 -G:99
8H:94 -H:99
9I:94 -I:99

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O3W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O3W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O3W)

(-) Exons   (0, 0)

(no "Exon" information available for 3O3W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:118
                                    23        33        43        53        63        73        83        93       103       113       123        
         Q9KB42_BACHD    14 EPANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG 131
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhheehhhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w A  14 EPANPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG 131
                                    23  |     33        43        53        63        73        83        93       103       113       123        
                                       26-MSE                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:117
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:118
                                    26        36        46        56        66        76        86        96       106       116       126        
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVE 134
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhhh...eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w B  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-LE 133
                                    26        36        46        56        66        76        86        96       106       116       126    | | 
                                    26-MSE                                                                                                  131 | 
                                                                                                                                              132 


Chain C from PDB  Type:PROTEIN  Length:118
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:119
                                    25        35        45        55        65        75        85        95       105       115       125         
         Q9KB42_BACHD    16 ANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVE 134
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhheehhhhhhhhhhhh...eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w C  16 ANPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-LE 133
                                    25|       35        45        55        65        75        85        95       105       115       125     | | 
                                     26-MSE                                                                                                  131 | 
                                                                                                                                               132 


Chain D from PDB  Type:PROTEIN  Length:114
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:114
                                    26        36        46        56        66        76        86        96       106       116       126    
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKEN 130
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3o3w D  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKEN 130
                                    26        36        46        56        66        76        86        96       106       116       126    
                                    26-MSE                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:118
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:119
                                    25        35        45        55        65        75        85        95       105       115       125         
         Q9KB42_BACHD    16 ANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVE 134
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhheehhhhhhhhhhh....eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w E  16 ANPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-LE 133
                                    25|       35        45        55        65        75        85        95       105       115       125     | | 
                                     26-MSE                                                                                                  131 | 
                                                                                                                                               132 


Chain F from PDB  Type:PROTEIN  Length:118
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:121
                                    24        34        44        54        64        74        84        94       104       114       124       134 
         Q9KB42_BACHD    15 PANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEG 135
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhheehhhhhhhhhhhh--.eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w F  15 PANPNEAYRHYmKKLSYETDIADLSIDIKKG--GIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-LEH 134
                                    24 |      34        44|  |    54        64        74        84        94       104       114       124      |133 
                                      26-MSE             45 48                                                                                131 |  
                                                                                                                                                132  


Chain G from PDB  Type:PROTEIN  Length:114
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:114
                                    26        36        46        56        66        76        86        96       106       116       126    
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKEN 130
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhhh...eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3o3w G  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKEN 130
                                    26        36        46        56        66        76        86        96       106       116       126    
                                    26-MSE                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:116
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:121
                                    26        36        46        56        66        76        86        96       106       116       126       136 
         Q9KB42_BACHD    17 NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTL 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhhh...eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-----. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w H  17 NPNEAYRHYmKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-----L 132
                                    26        36        46        56        66        76        86        96       106       116       126    |    -|
                                    26-MSE                                                                                                  131   132


Chain I from PDB  Type:PROTEIN  Length:113
 aligned with Q9KB42_BACHD | Q9KB42 from UniProtKB/TrEMBL  Length:162

    Alignment length:122
                                    25        35        45        55        65        75        85        95       105       115       125       135  
         Q9KB42_BACHD    16 ANPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTL 137
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------Rhoda    nese-3o3wI01 I:39-129                                                             --     - Pfam domains (1)
           Pfam domains (2) -----------------------Rhoda    nese-3o3wI02 I:39-129                                                             --     - Pfam domains (2)
           Pfam domains (3) -----------------------Rhoda    nese-3o3wI03 I:39-129                                                             --     - Pfam domains (3)
           Pfam domains (4) -----------------------Rhoda    nese-3o3wI04 I:39-129                                                             --     - Pfam domains (4)
           Pfam domains (5) -----------------------Rhoda    nese-3o3wI05 I:39-129                                                             --     - Pfam domains (5)
           Pfam domains (6) -----------------------Rhoda    nese-3o3wI06 I:39-129                                                             --     - Pfam domains (6)
           Pfam domains (7) -----------------------Rhoda    nese-3o3wI07 I:39-129                                                             --     - Pfam domains (7)
           Pfam domains (8) -----------------------Rhoda    nese-3o3wI08 I:39-129                                                             --     - Pfam domains (8)
           Pfam domains (9) -----------------------Rhoda    nese-3o3wI09 I:39-129                                                             --     - Pfam domains (9)
         Sec.struct. author .hhhhhhhhhhhhhhheehhhhhhhhhh----.eeeee..hhhhhhhh.....ee.hhhhh............eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhhh.-----. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3w I  16 ANPNEAYRHYmKKLSYETDIADLSIDIK----GIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENG-----L 132
                                    25|       35       | -  |     55        65        75        85        95       105       115       125     |   - |
                                     26-MSE           43   48                                                                                131   132
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O3W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O3W)

(-) Pfam Domains  (1, 9)

Asymmetric Unit
(-)
Clan: no clan defined [family: Rhodanese] (33)

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