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Biological Unit 1 (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF FUCU FROM BIFIDOBACTERIUM LONGUM TO 1.65A

Authors :   A. J. Stein, X. Xu, H. Cui, A. Savchenko, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)

Date :   04 May 10 (Deposition) - 12 May 10 (Release) - 12 May 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J  (1x)
Biol. Unit 2: A,E  (1x)
Biol. Unit 3: B,G  (1x)
Biol. Unit 4: C,J  (1x)
Biol. Unit 5: D,I  (1x)
Biol. Unit 6: F,H  (1x)

Keywords :   Psi, Mcsg, Structural Genomics, Midwest Center For Structural Genomics, Protein Structure Initiative, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. J. Stein, X. Xu, H. Cui, A. Savchenko, A. Joachimiak
The Crystal Structure Of Fucu From Bifidobacterium Longum To 1. 65A
To Be Published
PubMed: search

Molecule 1 - PROTEIN FUCU
	Chains	:	A, B, C, D, E, F, G, H, I, J
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET DERIVATIVE
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BLON_2305
	Organism Scientific	:	BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS
	Organism Taxid	:	391904
	Strain	:	ATCC 15697
	Synonym	:	PROTEIN RBSD

		1	2	3	4	5	6	7	8	9	10
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 1 (1x)	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 2 (1x)	:	A				E
Biological Unit 3 (1x)	:		B					G
Biological Unit 4 (1x)	:			C							J
Biological Unit 5 (1x)	:				D					I
Biological Unit 6 (1x)	:						F		H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 62)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	MSE	30	Mod. Amino Acid	SELENOMETHIONINE
3	NA	15	Ligand/Ion	SODIUM ION
4	PGE	11	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (3, 47)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	MSE	30	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	11	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (3, 11)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	3	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 3 (3, 10)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 4 (2, 10)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	4	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 5 (1, 6)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 6 (3, 10)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:66 , THR A:67 , GLY A:142 , VAL A:143 , HOH A:1295	BINDING SITE FOR RESIDUE NA A 149
02	AC2	SOFTWARE	ASP A:30 , PHE A:33 , ASN A:136 , GOL A:152 , HOH A:735	BINDING SITE FOR RESIDUE NA A 150
03	AC3	SOFTWARE	GLY A:23 , ASP A:24 , SER I:37 , PHE I:113	BINDING SITE FOR RESIDUE PGE A 151
04	AC4	SOFTWARE	ASP A:30 , ASN A:32 , ARG A:112 , GLN A:133 , TYR A:134 , NA A:150 , HOH A:735 , HIS G:22 , VAL G:143	BINDING SITE FOR RESIDUE GOL A 152
05	AC5	SOFTWARE	THR B:67 , GLY B:142 , VAL B:143	BINDING SITE FOR RESIDUE NA B 149
06	AC6	SOFTWARE	ASP B:30 , PHE B:33 , ASN B:136 , GOL B:152 , HOH B:1296	BINDING SITE FOR RESIDUE NA B 150
07	AC7	SOFTWARE	HIS B:22 , GLY B:23 , ASP B:24 , PHE C:113	BINDING SITE FOR RESIDUE PGE B 151
08	AC8	SOFTWARE	ASP B:30 , ASN B:32 , MSE B:76 , ARG B:112 , GLN B:133 , TYR B:134 , NA B:150 , HOH B:1296 , HIS E:22 , VAL E:143	BINDING SITE FOR RESIDUE GOL B 152
09	AC9	SOFTWARE	ASP C:66 , THR C:67 , GLY C:142 , VAL C:143 , HOH C:1013	BINDING SITE FOR RESIDUE NA C 149
10	BC1	SOFTWARE	GLY C:23 , ASP C:24 , PGE C:151 , SER F:37 , ILE F:38 , PHE F:113	BINDING SITE FOR RESIDUE PGE C 150
11	BC2	SOFTWARE	ASP C:24 , GLN C:25 , ASN C:41 , ASN C:121 , ALA C:122 , TYR C:123 , PGE C:150 , HOH C:164 , HOH C:939 , SER F:37	BINDING SITE FOR RESIDUE PGE C 151
12	BC3	SOFTWARE	ASP D:66 , THR D:67 , GLY D:142 , VAL D:143 , HOH D:1027	BINDING SITE FOR RESIDUE NA D 149
13	BC4	SOFTWARE	THR E:67 , GLY E:142 , VAL E:143 , HOH E:538	BINDING SITE FOR RESIDUE NA E 149
14	BC5	SOFTWARE	ASP E:30 , PHE E:33 , ASN E:136 , GOL E:153 , HOH E:937	BINDING SITE FOR RESIDUE NA E 150
15	BC6	SOFTWARE	GLY D:23 , ASP D:24 , SER E:37 , PHE E:113	BINDING SITE FOR RESIDUE PGE E 151
16	BC7	SOFTWARE	SER B:37 , PHE B:113 , TYR B:116 , HIS E:22 , GLY E:23 , ASP E:24 , GLN E:140	BINDING SITE FOR RESIDUE PGE E 152
17	BC8	SOFTWARE	HIS D:22 , VAL D:143 , ASP E:30 , GLN E:133 , TYR E:134 , ASN E:136 , NA E:150 , HOH E:937	BINDING SITE FOR RESIDUE GOL E 153
18	BC9	SOFTWARE	THR F:67 , GLY F:142 , VAL F:143 , HOH F:1294	BINDING SITE FOR RESIDUE NA F 149
19	CC1	SOFTWARE	ASP F:30 , PHE F:33 , ASN F:136 , GOL F:152	BINDING SITE FOR RESIDUE NA F 150
20	CC2	SOFTWARE	TYR C:68 , PHE C:145 , PRO F:80 , GLY F:81	BINDING SITE FOR RESIDUE PGE F 151
21	CC3	SOFTWARE	HIS C:22 , VAL C:143 , ASP F:30 , GLN F:133 , TYR F:134 , NA F:150	BINDING SITE FOR RESIDUE GOL F 152
22	CC4	SOFTWARE	THR G:67 , GLY G:142 , VAL G:143	BINDING SITE FOR RESIDUE NA G 149
23	CC5	SOFTWARE	SER A:37 , PHE A:113 , TYR A:116 , GLY G:23 , ASP G:24 , GLN G:140	BINDING SITE FOR RESIDUE PGE G 150
24	CC6	SOFTWARE	ASP G:30 , PHE G:33 , GLN G:133 , TYR G:134 , ASN G:136 , HIS J:22 , VAL J:143	BINDING SITE FOR RESIDUE GOL G 151
25	CC7	SOFTWARE	ASP H:66 , THR H:67 , GLY H:142 , VAL H:143 , HOH H:1135	BINDING SITE FOR RESIDUE NA H 149
26	CC8	SOFTWARE	ASP H:30 , PHE H:33 , ASN H:136 , GOL H:152 , HOH H:1297	BINDING SITE FOR RESIDUE NA H 150
27	CC9	SOFTWARE	SER H:37 , PHE H:113 , GLY I:23 , ASP I:24	BINDING SITE FOR RESIDUE PGE H 151
28	DC1	SOFTWARE	ASP H:30 , MSE H:76 , ARG H:112 , TYR H:116 , GLN H:133 , TYR H:134 , NA H:150 , HOH H:1297 , HIS I:22 , VAL I:143	BINDING SITE FOR RESIDUE GOL H 152
29	DC2	SOFTWARE	ASP I:66 , THR I:67 , GLY I:142 , VAL I:143 , HOH I:967	BINDING SITE FOR RESIDUE NA I 149
30	DC3	SOFTWARE	THR J:67 , GLY J:142 , VAL J:143 , HOH J:756	BINDING SITE FOR RESIDUE NA J 149
31	DC4	SOFTWARE	SER G:37 , GLY J:23 , ASP J:24 , GLN J:25 , ASN J:121 , ALA J:122 , TYR J:123 , PGE J:151 , HOH J:165 , HOH J:752	BINDING SITE FOR RESIDUE PGE J 150
32	DC5	SOFTWARE	ILE G:38 , PHE G:113 , GLY J:23 , ASP J:24 , PGE J:150	BINDING SITE FOR RESIDUE PGE J 151

(no "SS Bond" information available for 3MVK)

(no "Cis Peptide Bond" information available for 3MVK)

(no "SAP(SNP)/Variant" information available for 3MVK)

(no "PROSITE Motif" information available for 3MVK)

(no "Exon" information available for 3MVK)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:140
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:140
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
               SCOP domains d3mvka_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhhhh.........eeee.........hhhhhhhhhhhhhhh.hhhh.eeeehhhhhhhhhh...eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk A   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144
                                          20-MSE                     47-MSE                       76-MSE

Chain B from PDB  Type:PROTEIN  Length:140
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:140
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
               SCOP domains d3mvkb_ B: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhhhh.........eeee..........hhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk B   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144
                                          20-MSE                     47-MSE                       76-MSE

Chain C from PDB  Type:PROTEIN  Length:141
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvkc_ C: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee.........hhhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk C   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE

Chain D from PDB  Type:PROTEIN  Length:140
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvkd_ D: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee......-..hhhhhhhhhhhhhhh.hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk D   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGD-VATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |     |84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE82 |                                                             
                                                                                                          84

Chain E from PDB  Type:PROTEIN  Length:141
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvke_ E: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhhhh.........eeee.........hhhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk E   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE

Chain F from PDB  Type:PROTEIN  Length:140
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:140
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
               SCOP domains d3mvkf_ F: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee..........hhhhhhhhhhhhhh.hhhh.eeeehhhhhhhhhh...eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk F   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV 144
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144
                                          20-MSE                     47-MSE                       76-MSE

Chain G from PDB  Type:PROTEIN  Length:143
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:143
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142   
         B7GNK7_BIFLS     3 KGIPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvkg_ G: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee..........hhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk G   3 KGIPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    12       |22        32        42    |   52        62        72   |    82        92       102       112       122       132       142   
                                            20-MSE                     47-MSE                       76-MSE

Chain H from PDB  Type:PROTEIN  Length:141
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvkh_ H: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee..........hhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk H   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE

Chain I from PDB  Type:PROTEIN  Length:141
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvki_ I: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee.........hhhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk I   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE

Chain J from PDB  Type:PROTEIN  Length:141
 aligned with B7GNK7_BIFLS | B7GNK7 from UniProtKB/TrEMBL  Length:148

    Alignment length:141
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144 
         B7GNK7_BIFLS     5 IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
               SCOP domains d3mvkj_ J: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) RbsD_FucU-3mvkJ01 J:5-145                                                                                                                     Pfam domains (1)
           Pfam domains (2) RbsD_FucU-3mvkJ02 J:5-145                                                                                                                     Pfam domains (2)
           Pfam domains (3) RbsD_FucU-3mvkJ03 J:5-145                                                                                                                     Pfam domains (3)
           Pfam domains (4) RbsD_FucU-3mvkJ04 J:5-145                                                                                                                     Pfam domains (4)
           Pfam domains (5) RbsD_FucU-3mvkJ05 J:5-145                                                                                                                     Pfam domains (5)
           Pfam domains (6) RbsD_FucU-3mvkJ06 J:5-145                                                                                                                     Pfam domains (6)
           Pfam domains (7) RbsD_FucU-3mvkJ07 J:5-145                                                                                                                     Pfam domains (7)
           Pfam domains (8) RbsD_FucU-3mvkJ08 J:5-145                                                                                                                     Pfam domains (8)
           Pfam domains (9) RbsD_FucU-3mvkJ09 J:5-145                                                                                                                     Pfam domains (9)
          Pfam domains (10) RbsD_FucU-3mvkJ10 J:5-145                                                                                                                     Pfam domains (10)
         Sec.struct. author .....hhhhhhhhhhh....eeeee....hhhhhh...eeeee...hhhhhhhhhhh...........eeee..........hhhhhhhhhhhh...hhhh.eeeehhhhhhhhhh...eeeee........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvk J   5 IPKIIPPELLKVLCEmGHGDQLVIADGNFPAESIGKNAIVVRmDGHGGGEILKAILTVFPLDTYVDKPATLmEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVVF 145
                                    14     |  24        34        44  |     54        64        74 |      84        94       104       114       124       134       144 
                                          20-MSE                     47-MSE                       76-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: RbsD-like (12)

Superfamily: RbsD-like (12)

Family: automated matches (7)

Protein domain: automated matches (7)

Bifidobacterium longum [TaxId: 391904] (1)

1a	d3mvka_	A:
1b	d3mvkb_	B:
1c	d3mvkc_	C:
1d	d3mvkd_	D:
1e	d3mvke_	E:
1f	d3mvkf_	F:
1g	d3mvkg_	G:
1h	d3mvkh_	H:
1i	d3mvki_	I:
1j	d3mvkj_	J:

(no "CATH Domain" information available for 3MVK)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J (B7GNK7_BIFLS | B7GNK7)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0048029	monosaccharide binding	Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
biological process
	GO:0005996	monosaccharide metabolic process	The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.

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Description

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Ligands, Modified Residues, Ions (4, 62)

Sites (32, 32)

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