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3MVK
Biol. Unit 6
Info
Asym.Unit (253 KB)
Biol.Unit 1 (244 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (53 KB)
Biol.Unit 5 (52 KB)
Biol.Unit 6 (53 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF FUCU FROM BIFIDOBACTERIUM LONGUM TO 1.65A
Authors
:
A. J. Stein, X. Xu, H. Cui, A. Savchenko, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date
:
04 May 10 (Deposition) - 12 May 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: A,E (1x)
Biol. Unit 3: B,G (1x)
Biol. Unit 4: C,J (1x)
Biol. Unit 5: D,I (1x)
Biol. Unit 6: F,H (1x)
Keywords
:
Psi, Mcsg, Structural Genomics, Midwest Center For Structural Genomics, Protein Structure Initiative, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Stein, X. Xu, H. Cui, A. Savchenko, A. Joachimiak
The Crystal Structure Of Fucu From Bifidobacterium Longum To 1. 65A
To Be Published
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
3o: SODIUM ION (NAo)
4a: TRIETHYLENE GLYCOL (PGEa)
4b: TRIETHYLENE GLYCOL (PGEb)
4c: TRIETHYLENE GLYCOL (PGEc)
4d: TRIETHYLENE GLYCOL (PGEd)
4e: TRIETHYLENE GLYCOL (PGEe)
4f: TRIETHYLENE GLYCOL (PGEf)
4g: TRIETHYLENE GLYCOL (PGEg)
4h: TRIETHYLENE GLYCOL (PGEh)
4i: TRIETHYLENE GLYCOL (PGEi)
4j: TRIETHYLENE GLYCOL (PGEj)
4k: TRIETHYLENE GLYCOL (PGEk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
NA
-1
Ligand/Ion
SODIUM ION
4
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
[
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]
Sites
(10, 10)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
GLY C:23 , ASP C:24 , PGE C:151 , SER F:37 , ILE F:38 , PHE F:113
BINDING SITE FOR RESIDUE PGE C 150
02
BC2
SOFTWARE
ASP C:24 , GLN C:25 , ASN C:41 , ASN C:121 , ALA C:122 , TYR C:123 , PGE C:150 , HOH C:164 , HOH C:939 , SER F:37
BINDING SITE FOR RESIDUE PGE C 151
03
BC9
SOFTWARE
THR F:67 , GLY F:142 , VAL F:143 , HOH F:1294
BINDING SITE FOR RESIDUE NA F 149
04
CC1
SOFTWARE
ASP F:30 , PHE F:33 , ASN F:136 , GOL F:152
BINDING SITE FOR RESIDUE NA F 150
05
CC2
SOFTWARE
TYR C:68 , PHE C:145 , PRO F:80 , GLY F:81
BINDING SITE FOR RESIDUE PGE F 151
06
CC3
SOFTWARE
HIS C:22 , VAL C:143 , ASP F:30 , GLN F:133 , TYR F:134 , NA F:150
BINDING SITE FOR RESIDUE GOL F 152
07
CC7
SOFTWARE
ASP H:66 , THR H:67 , GLY H:142 , VAL H:143 , HOH H:1135
BINDING SITE FOR RESIDUE NA H 149
08
CC8
SOFTWARE
ASP H:30 , PHE H:33 , ASN H:136 , GOL H:152 , HOH H:1297
BINDING SITE FOR RESIDUE NA H 150
09
CC9
SOFTWARE
SER H:37 , PHE H:113 , GLY I:23 , ASP I:24
BINDING SITE FOR RESIDUE PGE H 151
10
DC1
SOFTWARE
ASP H:30 , MSE H:76 , ARG H:112 , TYR H:116 , GLN H:133 , TYR H:134 , NA H:150 , HOH H:1297 , HIS I:22 , VAL I:143
BINDING SITE FOR RESIDUE GOL H 152
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d3mvka_ (A:)
1b: SCOP_d3mvkb_ (B:)
1c: SCOP_d3mvkc_ (C:)
1d: SCOP_d3mvkd_ (D:)
1e: SCOP_d3mvke_ (E:)
1f: SCOP_d3mvkf_ (F:)
1g: SCOP_d3mvkg_ (G:)
1h: SCOP_d3mvkh_ (H:)
1i: SCOP_d3mvki_ (I:)
1j: SCOP_d3mvkj_ (J:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
RbsD-like
(12)
Superfamily
:
RbsD-like
(12)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Bifidobacterium longum [TaxId: 391904]
(1)
1a
d3mvka_
A:
1b
d3mvkb_
B:
1c
d3mvkc_
C:
1d
d3mvkd_
D:
1e
d3mvke_
E:
1f
d3mvkf_
F:
1g
d3mvkg_
G:
1h
d3mvkh_
H:
1i
d3mvki_
I:
1j
d3mvkj_
J:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_RbsD_FucU_3mvkJ01 (J:5-145)
1b: PFAM_RbsD_FucU_3mvkJ02 (J:5-145)
1c: PFAM_RbsD_FucU_3mvkJ03 (J:5-145)
1d: PFAM_RbsD_FucU_3mvkJ04 (J:5-145)
1e: PFAM_RbsD_FucU_3mvkJ05 (J:5-145)
1f: PFAM_RbsD_FucU_3mvkJ06 (J:5-145)
1g: PFAM_RbsD_FucU_3mvkJ07 (J:5-145)
1h: PFAM_RbsD_FucU_3mvkJ08 (J:5-145)
1i: PFAM_RbsD_FucU_3mvkJ09 (J:5-145)
1j: PFAM_RbsD_FucU_3mvkJ10 (J:5-145)
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Clans
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RbsD_FucU]
(9)
Family
:
RbsD_FucU
(9)
Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
(1)
1a
RbsD_FucU-3mvkJ01
J:5-145
1b
RbsD_FucU-3mvkJ02
J:5-145
1c
RbsD_FucU-3mvkJ03
J:5-145
1d
RbsD_FucU-3mvkJ04
J:5-145
1e
RbsD_FucU-3mvkJ05
J:5-145
1f
RbsD_FucU-3mvkJ06
J:5-145
1g
RbsD_FucU-3mvkJ07
J:5-145
1h
RbsD_FucU-3mvkJ08
J:5-145
1i
RbsD_FucU-3mvkJ09
J:5-145
1j
RbsD_FucU-3mvkJ10
J:5-145
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