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(-) Description

Title :  TEG12 APO
 
Authors :  M. J. Bick, J. J. Banik, S. A. Darst, S. F. Brady
Date :  05 Apr 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Sulfotransferase, Teicoplanin, Antibiotic, Environmental Dna, Paps, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Bick, J. J. Banik, S. A. Darst, S. F. Brady
Crystal Structures Of The Glycopeptide Sulfotransferase Teg12 In A Complex With The Teicoplanin Aglycone.
Biochemistry V. 49 4159 2010
PubMed-ID: 20361791  |  Reference-DOI: 10.1021/BI100150V

(-) Compounds

Molecule 1 - TEG12
    Chains: A, B
    EC Number: 2.8.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TEG1, TEG12
    Organism Scientific: UNCULTURED SOIL BACTERIUM
    Organism Taxid: 164851

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2IMD1Ligand/IonIMIDAZOLE
3PME1Ligand/IonN-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2IMD1Ligand/IonIMIDAZOLE
3PME1Ligand/IonN-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2IMD2Ligand/IonIMIDAZOLE
3PME2Ligand/IonN-L-ALPHA-ASPARTYL L-PHENYLALANINE 1-METHYL ESTER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:-23 , HIS A:-26 , SER A:-22 , GLY A:-21 , GLU A:60 , PRO A:61 , LEU A:187BINDING SITE FOR RESIDUE GOL A 286
2AC2SOFTWARELEU A:-20 , HIS A:-24 , HIS A:-25 , ARG A:-17 , GLY A:-16 , ARG A:19 , ALA A:23 , LYS A:29 , PRO A:31BINDING SITE FOR RESIDUE GOL A 287
3AC3SOFTWARESER A:-15 , ALA A:-12 , SER A:-11 , MET A:-10 , GLN A:32 , ASP A:38 , SER A:41BINDING SITE FOR RESIDUE IMD A 289
4AC4SOFTWARELYS A:12 , GLY A:14 , THR A:16 , TRP A:17 , ARG A:90 , SER A:98 , TYR A:167BINDING SITE FOR RESIDUE PME A 290

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MGC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:-19 -Pro A:-18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MGC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MGC)

(-) Exons   (0, 0)

(no "Exon" information available for 3MGC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
 aligned with B7T1D7_9BACT | B7T1D7 from UniProtKB/TrEMBL  Length:285

    Alignment length:308
                                                   1                                                                                                                                                                                                                                                                                            
                                     -         -   |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277        
         B7T1D7_9BACT     - -----------------------MNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWNALGAGGGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPIRHGDARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh................eeeeeee....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..........eeeeee.....hhhhhhhh..eeeeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....------.....hhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh-----------------------------------------------..hhhhhhhhhhhhhhhh......hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mgc A -31 SSHHHHHHSSGLVPRGSHMASMSMNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWN------GVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAAS-----------------------------------------------QSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
                                   -22       -12 ||      7        17        27        37        47        57        67        77        87        97       107       117       127 |     137       147       157       167       177       187       197     |   -         -         -         -         -   |   257       267       277        
                                               -10|                                                                                                                              129    136                                                                203                                             251                                  
                                                  0                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:227
 aligned with B7T1D7_9BACT | B7T1D7 from UniProtKB/TrEMBL  Length:285

    Alignment length:285
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
         B7T1D7_9BACT     1 MNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWNALGAGGGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPIRHGDARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Sulfotransfer_1-3mgcB01               B:5-210                                                                                                                                                                                                     --------------------------------------- Pfam domains (1)
           Pfam domains (2) ----Sulfotransfer_1-3mgcB02               B:5-210                                                                                                                                                                                                     --------------------------------------- Pfam domains (2)
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhh--------------.hhhhhhhh...........eeeee.....hhhhhhhh..eeeeeeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.....--------....hhhhhhhhhhh.........eeeeeehhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh------------------------------------......hhhhhhhhhhhhhhhhh...hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mgc B   1 MNGIRWIASYPKAGNTWVRCMLAAYIT--------------LTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGW--------VGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRE------------------------------------GRYDQSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
                                    10        20      |  -         - |      50        60        70        80        90       100       110       120       | -      |140       150       160       170       180       190       200       210         -         -         -      |250       260       270       280     
                                                     27             42                                                                                   128      137                                                                      210                                  247
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MGC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MGC)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (B7T1D7_9BACT | B7T1D7)
molecular function
    GO:0008146    sulfotransferase activity    Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        B7T1D7_9BACT | B7T1D7: 3mg9 3mgb

(-) Related Entries Specified in the PDB File

3mg9 TEG 12 BINARY STRUCTURE COMPLEXED WITH THE TEICOPLANIN AGLYCONE
3mgb TEG 12 TERNARY STRUCTURE COMPLEXED WITH PAP AND THE TEICOPLANIN AGLYCONE