3MG9 - JenaLib

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Title :   TEG 12 BINARY STRUCTURE COMPLEXED WITH THE TEICOPLANIN AGLYCONE

Authors :   M. J. Bick, J. J. Banik, S. A. Darst, S. F. Brady

Date :   05 Apr 10 (Deposition) - 09 Jun 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.27

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Sulfotransferase, Glyopeptide, Antibiotic, Transferase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. J. Bick, J. J. Banik, S. A. Darst, S. F. Brady
Crystal Structures Of The Glycopeptide Sulfotransferase Teg12 In A Complex With The Teicoplanin Aglycone.
Biochemistry V. 49 4159 2010
PubMed-ID: 20361791 | Reference-DOI: 10.1021/BI100150V

Molecule 1 - TEG12
	Chains	:	A
	EC Number	:	2.8.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TEG1, TEG12
	Organism Scientific	:	UNCULTURED SOIL BACTERIUM
	Organism Taxid	:	164851

Molecule 2 - TEICOPLANIN AGLYCONE
	Chains	:	B, C
	Organism Scientific	:	NONOMURAEA SP. ATCC 39727
	Organism Taxid	:	93944

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 21)

No.	Name	Count	Type	Full Name
1	3FG	4	OTHER	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	3MY	2	OTHER	3-CHLORO-D-TYROSINE
3	FMT	2	Ligand/Ion	FORMIC ACID
4	GHP	6	OTHER	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5	GOL	1	Ligand/Ion	GLYCEROL
6	OMY	2	OTHER	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
7	UNK	4	Mod. Amino Acid

Biological Unit 1 (6, 34)

No.	Name	Count	Type	Full Name
1	3FG	8	OTHER	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	3MY	4	OTHER	3-CHLORO-D-TYROSINE
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GHP	12	OTHER	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5	GOL	2	Ligand/Ion	GLYCEROL
6	OMY	4	OTHER	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
7	UNK	-1	Mod. Amino Acid

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:15 , THR A:43 , GLU A:45 , LYS A:65 , THR A:66 , HIS A:67	BINDING SITE FOR RESIDUE FMT A 288
2	AC2	SOFTWARE	LYS A:12 , ASN A:35 , HOH A:2062	BINDING SITE FOR RESIDUE FMT A 289
3	AC3	SOFTWARE	ARG A:214 , GHP B:387 , 3MY B:388 , 3FG B:389 , GHP B:390 , OMY B:392	BINDING SITE FOR RESIDUE GOL B 400
4	AC4	SOFTWARE	LYS A:12 , ARG A:90 , LEU A:97 , SER A:98 , ARG A:101 , SER A:106 , ARG A:107 , ASP A:108 , TYR A:167 , LYS A:171 , GLU A:206 , ARG A:207 , GLU A:210 , LYS A:213 , ARG A:214 , GLU A:216 , ARG A:248 , GLN A:251 , HOH A:2067 , HOH A:2075 , GOL B:400 , HOH B:2001 , HOH B:2005 , HOH B:2006	BINDING SITE FOR CHAIN B OF TEICOPLANIN AGLYCONE
5	AC5	SOFTWARE	PRO A:190 , VAL A:191 , ASP A:192 , ILE A:193 , MET A:208 , ARG A:209 , LEU A:211 , GLU A:212 , SER A:215 , GLU A:216 , HOH C:2001 , HOH C:2002	BINDING SITE FOR CHAIN C OF TEICOPLANIN AGLYCONE

(no "SS Bond" information available for 3MG9)

Asymmetric Unit

No.	Residues
1	Ghp B:391	-	Omy B:392
2	Ghp C:391	-	Omy C:392

(no "SAP(SNP)/Variant" information available for 3MG9)

(no "PROSITE Motif" information available for 3MG9)

(no "Exon" information available for 3MG9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:255
 aligned with B7T1D7_9BACT | B7T1D7 from UniProtKB/TrEMBL  Length:285

    Alignment length:290
                                 1                                                                                                                                                                                                                                                                                            
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285
         B7T1D7_9BACT     - -----MNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWNALGAGGGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPIRHGDARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
               SCOP domains d3mg9a_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------Sulfotransfer_1-3mg9A01 A:5-216                                                                                                                                                                                                                   --------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee....hhhhhhhhhhhhhhh....hhhhhhhhheehhhhhhh..........eeeeee.....hhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....-----hhhhh.hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh------------------------------......hhhhhhhhhhhhhhhhh..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mg9 A  -8 xxxxSMNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADVPVLGLYGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWN-----GGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSE------------------------------GRYDQSLSFLGEDIESDYQELLHGDSGFALYAKQYGYAG 285
                            |||||    5        15        25        35        45        55        65        75        85        95       105       115       125   |   135       145       155       165       175       185       195       205       215|        -         -         - |     255       265       275       285
                            |||||                                                                                                                              129   135                                                                              216                            247                                      
                           -8-UNK                                                                                                                                                                                                                                                                                             
                            -7-UNK                                                                                                                                                                                                                                                                                            
                             -6-UNK                                                                                                                                                                                                                                                                                           
                              -5-UNK                                                                                                                                                                                                                                                                                          
                                0

Chain B from PDB  Type:OTHER  Length:7
                                       
                 3mg9 B 387 xxxxxxx 393
                            |||||||
                          387-GHP||
                           388-3MY|
                            389-3FG
                             390-GHP
                              391-GHP
                               392-OMY
                                393-3FG

Chain C from PDB  Type:OTHER  Length:7
                                       
                 3mg9 C 387 xxxxxxx 393
                            |||||||
                            |||||||
                          387-GHP||
                           388-3MY|
                            389-3FG
                             390-GHP
                              391-GHP
                               392-OMY
                                393-3FG

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Uncultured soil [TaxId: 164851] (3)

d3mg9a_

(no "CATH Domain" information available for 3MG9)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: Sulfotransfer_1 (24)

uncultured soil bacterium (4)

Sulfotransfer_1-3mg9A01

A:5-216

Asymmetric Unit(hide GO term definitions)

Chain A (B7T1D7_9BACT | B7T1D7)

molecular function
	GO:0008146		sulfotransferase activity		Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		3FG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		3MY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FMT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GHP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OMY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNK	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
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		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ghp B:391 - Omy B:392	[ RasMol ]
		Ghp C:391 - Omy C:392	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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2wdx	THE COMPLEXED CRYSTAL STRUCTURE OF THE PRIMARY HEXOSE OXIDASE (DBV29) IN ANTIBIOTIC A40926 BIOSYNTHESIS
3mgb	TEG 12 TERNARY STRUCTURE COMPLEXED WITH PAP AND THE TEICOPLANIN AGLYCONE
3mgc	TEG12 APO

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 21)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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