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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ENDORIBONUCLEASE L-PSP FROM ENTAMOEBA HISTOLYTICA, ORTHORHOMBIC FORM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  11 Mar 10  (Deposition) - 31 Mar 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gardberg, J. Abendroth, D. Davies, B. Staker
Crystal Structure Of A Putative Endoribonuclease L-Psp From Entamoeba Histolytica, Orthorhombic Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ENDORIBONUCLEASE L-PSP
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EHI_087570
    Organism Scientific: ENTAMOEBA HISTOLYTICA
    Organism Taxid: 294381

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS B:61 , HOH F:145BINDING SITE FOR RESIDUE CL B 128

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M4S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3M4S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3M4S)

(-) Exons   (0, 0)

(no "Exon" information available for 3M4S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
         C4LXT9_ENTHI     3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4sa_ A: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4s A   3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     


Chain B from PDB  Type:PROTEIN  Length:125
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
         C4LXT9_ENTHI     3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4sb_ B: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4s B   3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     


Chain C from PDB  Type:PROTEIN  Length:125
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
         C4LXT9_ENTHI     3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4sc_ C: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4s C   3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     


Chain D from PDB  Type:PROTEIN  Length:125
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
         C4LXT9_ENTHI     3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4sd_ D: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4s D   3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     


Chain E from PDB  Type:PROTEIN  Length:125
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
         C4LXT9_ENTHI     3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4se_ E: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m4s E   3 KLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     


Chain F from PDB  Type:PROTEIN  Length:126
 aligned with C4LXT9_ENTHI | C4LXT9 from UniProtKB/TrEMBL  Length:127

    Alignment length:126
                                    11        21        31        41        51        61        71        81        91       101       111       121      
         C4LXT9_ENTHI     2 SKLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
               SCOP domains d3m4sf_ F: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------Ribonuc_L-PSP-3m4sF01 F:9-127                                                                                           Pfam domains (1)
           Pfam domains (2) -------Ribonuc_L-PSP-3m4sF02 F:9-127                                                                                           Pfam domains (2)
           Pfam domains (3) -------Ribonuc_L-PSP-3m4sF03 F:9-127                                                                                           Pfam domains (3)
           Pfam domains (4) -------Ribonuc_L-PSP-3m4sF04 F:9-127                                                                                           Pfam domains (4)
           Pfam domains (5) -------Ribonuc_L-PSP-3m4sF05 F:9-127                                                                                           Pfam domains (5)
           Pfam domains (6) -------Ribonuc_L-PSP-3m4sF06 F:9-127                                                                                           Pfam domains (6)
         Sec.struct. author ..eeee..............eeee..eeeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m4s F   2 SKLTVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 127
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M4S)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ribonuc_L-PSP] (16)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3M4S)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        C4LXT9_ENTHI | C4LXT9: 3m1x 3mqw

(-) Related Entries Specified in the PDB File

3m1x RHOMBOHEDRAL FORM WITH 1 MONOMER PER ASU, CITRATE BOUND RELATED ID: ENHIA.00579.A RELATED DB: TARGETDB