Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
(-)Biological Unit 9
(-)Biological Unit 10
(-)Biological Unit 11
(-)Biological Unit 12
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)
Image Biological Unit 9
Biological Unit 9  (Jmol Viewer)
Image Biological Unit 10
Biological Unit 10  (Jmol Viewer)
Image Biological Unit 11
Biological Unit 11  (Jmol Viewer)
Image Biological Unit 12
Biological Unit 12  (Jmol Viewer)

(-) Description

Title :  RAT GALECTIN-1 COMPLEX WITH LACTOSE
 
Authors :  Y. D. Lobsanov, J. M. Rini, H. Leffler
Date :  07 Mar 10  (Deposition) - 21 Jul 10  (Release) - 04 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  A,B  (1x)
Biol. Unit 10:  C,D  (1x)
Biol. Unit 11:  E,F  (1x)
Biol. Unit 12:  G,H  (1x)
Keywords :  Galectin-1, Lectin, Beta Sandwich, Extracellular Matrix, Secreted, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Salomonsson, A. Larumbe, J. Tejler, E. Tullberg, H. Rydberg, A. Sundin, A. Khabut, T. Frejd, Y. D. Lobsanov, J. M. Rini, U. J. Nilsson H. Leffler
Monovalent Interactions Of Galectin-1.
Biochemistry V. 49 9518 2010
PubMed-ID: 20873803  |  Reference-DOI: 10.1021/BI1009584

(-) Compounds

Molecule 1 - GALECTIN-1
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3D
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneLGALS1
    Organism CommonBROWN RAT,RAT,RATS
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymGAL-1, LECTIN GALACTOSIDE-BINDING SOLUBLE 1, BETA- GALACTOSIDE-BINDING LECTIN L-14-I, LACTOSE-BINDING LECTIN 1, S-LAC LECTIN 1, GALAPTIN, 14 KDA LECTIN, RL 14.5

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H
Biological Unit 9 (1x)AB      
Biological Unit 10 (1x)  CD    
Biological Unit 11 (1x)    EF  
Biological Unit 12 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1CSO16Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT5Ligand/IonBETA-LACTOSE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT-1Ligand/IonBETA-LACTOSE
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 5 (2, 3)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT-1Ligand/IonBETA-LACTOSE
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT-1Ligand/IonBETA-LACTOSE
Biological Unit 8 (2, 3)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 9 (2, 5)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 10 (2, 6)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT2Ligand/IonBETA-LACTOSE
Biological Unit 11 (2, 5)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 12 (2, 5)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2LAT1Ligand/IonBETA-LACTOSE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:44 , ASN A:46 , ARG A:48 , HIS A:52 , ASN A:61 , TRP A:68 , GLU A:71BINDING SITE FOR RESIDUE LAT A 999
2AC2SOFTWAREHIS C:44 , ASN C:46 , ARG C:48 , HIS C:52 , ASN C:61 , GLU C:71 , ARG C:73BINDING SITE FOR RESIDUE LAT C 999
3AC3SOFTWAREHIS D:44 , ASN D:46 , ARG D:48 , HIS D:52 , ASN D:61 , GLU D:71 , ARG D:73BINDING SITE FOR RESIDUE LAT D 999
4AC4SOFTWAREHIS E:44 , ASN E:46 , ARG E:48 , HIS E:52 , ASN E:61 , GLU E:71 , ARG E:73BINDING SITE FOR RESIDUE LAT E 999
5AC5SOFTWARETHR G:70 , HIS H:44 , ASN H:46 , ARG H:48 , HIS H:52 , ASN H:61 , GLU H:71 , ARG H:73BINDING SITE FOR RESIDUE LAT H 999

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M2M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3M2M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M2M)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  8A:3-134
B:3-134
C:3-134
D:3-134
E:3-134
F:3-134
G:3-134
H:3-134
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1A:3-134
-
-
-
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
B:3-134
-
-
-
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
C:3-134
-
-
-
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
-
D:3-134
-
-
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
-
-
E:3-134
-
-
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
-
-
-
F:3-134
-
-
Biological Unit 7 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:3-134
-
Biological Unit 8 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:3-134
Biological Unit 9 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  2A:3-134
B:3-134
-
-
-
-
-
-
Biological Unit 10 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  2-
-
C:3-134
D:3-134
-
-
-
-
Biological Unit 11 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  2-
-
-
-
E:3-134
F:3-134
-
-
Biological Unit 12 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.LEG1_RAT4-135
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:3-134
H:3-134

(-) Exons   (0, 0)

(no "Exon" information available for 3M2M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2ma_ A: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: A:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m A   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42        52        62        72        82     |  92       102       112       122       132  
                                                                                                                88-CSO                                   130-CSO

Chain B from PDB  Type:PROTEIN  Length:122
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2mb_ B: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeee..----..eeeeeeee..ee......------...eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: B:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m B   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFN----ANTIVCNSKDDGTWGTEQRE------PGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42       | -  |     62        72 |      82     |  92       102       112       122       132  
                                                                          50   55                 74     81     88-CSO                                   130-CSO

Chain C from PDB  Type:PROTEIN  Length:132
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2mc_ C: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: C:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m C   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42        52        62        72        82     |  92       102       112       122       132  
                                                                                                                88-CSO                                   130-CSO

Chain D from PDB  Type:PROTEIN  Length:132
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2md_ D: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: D:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m D   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42        52        62        72        82     |  92       102       112       122       132  
                                                                                                                88-CSO                                   130-CSO

Chain E from PDB  Type:PROTEIN  Length:132
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2me_ E: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: E:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m E   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42        52        62        72        82     |  92       102       112       122       132  
                                                                                                                88-CSO                                   130-CSO

Chain F from PDB  Type:PROTEIN  Length:122
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2mf_ F: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeee..----..eeeeeeee..ee...ee.------...eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: F:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m F   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFN----ANTIVCNSKDDGTWGTEQRE------PGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42       | -  |     62        72 |      82     |  92       102       112       122       132  
                                                                          50   55                 74     81     88-CSO                                   130-CSO

Chain G from PDB  Type:PROTEIN  Length:122
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2mg_ G: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeee..----..eeeeeeee..ee...ee.------...eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: G:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m G   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFN----ANTIVCNSKDDGTWGTEQRE------PGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42       | -  |     62        72 |      82     |  92       102       112       122       132  
                                                                          50   55                 74     81     88-CSO                                   130-CSO

Chain H from PDB  Type:PROTEIN  Length:132
 aligned with LEG1_RAT | P11762 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:132
                                    13        23        33        43        53        63        73        83        93       103       113       123       133  
             LEG1_RAT     4 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
               SCOP domains d3m2mh_ H: Galectin-1                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Gal-bind_lectin-3m2mH01 H:3-133                                                                                                    - Pfam domains (1)
           Pfam domains (2) Gal-bind_lectin-3m2mH02 H:3-133                                                                                                    - Pfam domains (2)
           Pfam domains (3) Gal-bind_lectin-3m2mH03 H:3-133                                                                                                    - Pfam domains (3)
           Pfam domains (4) Gal-bind_lectin-3m2mH04 H:3-133                                                                                                    - Pfam domains (4)
           Pfam domains (5) Gal-bind_lectin-3m2mH05 H:3-133                                                                                                    - Pfam domains (5)
           Pfam domains (6) Gal-bind_lectin-3m2mH06 H:3-133                                                                                                    - Pfam domains (6)
           Pfam domains (7) Gal-bind_lectin-3m2mH07 H:3-133                                                                                                    - Pfam domains (7)
           Pfam domains (8) Gal-bind_lectin-3m2mH08 H:3-133                                                                                                    - Pfam domains (8)
         Sec.struct. author ..eeeeeee....eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GALECTIN  PDB: H:3-134 UniProt: 4-135                                                                                                PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m2m H   3 GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVcITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKcVAFE 134
                                    12        22        32        42        52        62        72        82     |  92       102       112       122       132  
                                                                                                                88-CSO                                   130-CSO

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M2M)

(-) Pfam Domains  (1, 8)

Asymmetric Unit

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (LEG1_RAT | P11762)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0030395    lactose binding    Interacting selectively and non-covalently with lactose, a disaccharide of glucose and galactose, the carbohydrate of milk.
    GO:0043236    laminin binding    Interacting selectively and non-covalently with laminins, glycoproteins that are major constituents of the basement membrane of cells.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0071333    cellular response to glucose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0071407    cellular response to organic cyclic compound    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0033555    multicellular organismal response to stress    Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0045445    myoblast differentiation    The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
    GO:0010812    negative regulation of cell-substrate adhesion    Any process that decreases the frequency, rate or extent of cell-substrate adhesion. Cell-substrate adhesion is the attachment of a cell to the underlying substrate via adhesion molecules.
    GO:0010977    negative regulation of neuron projection development    Any process that decreases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0002317    plasma cell differentiation    The process in which a B cell acquires the specialized features of a plasma cell. A plasma cell is a lymphocyte which develops from a B cell and produces high amounts of antibody.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:0034120    positive regulation of erythrocyte aggregation    Any process that activates or increases the frequency, rate, or extent of erythrocyte aggregation.
    GO:0046598    positive regulation of viral entry into host cell    Any process that activates or increases the frequency, rate or extent of the introduction of viral entry into the host cell.
    GO:0048678    response to axon injury    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CSO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LAT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3m2m)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]
    Biological Unit 9  [ Jena3D ]
    Biological Unit 10  [ Jena3D ]
    Biological Unit 11  [ Jena3D ]
    Biological Unit 12  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3m2m
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  LEG1_RAT | P11762
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  LEG1_RAT | P11762
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEG1_RAT | P117624ga9 4no4

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3M2M)