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(-) Description

Title :  CRYSTAL STRUCTURE OF GALECTIN-1 L11A MUTANT
 
Authors :  M. Dessau
Date :  19 Nov 13  (Deposition) - 03 Dec 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B  (2x)
Biol. Unit 3:  D,E  (1x)
Biol. Unit 4:  F  (2x)
Keywords :  Beta Barrel, Lactose Binding Protein, Lactose, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Dessau, O. Segev
Crystal Structure Of Galectin-1 L11A Mutant
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GALECTIN-1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LGALS1
    Mutation: YES
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GAL-1, 14 KDA LECTIN, BETA-GALACTOSIDE-BINDING LECTIN L-14- I, GALAPTIN, LACTOSE-BINDING LECTIN 1, LECTIN GALACTOSIDE-BINDING SOLUBLE 1, RL 14.5, S-LAC LECTIN 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A C   
Biological Unit 2 (2x):  B    
Biological Unit 3 (1x):    DE 
Biological Unit 4 (2x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2LAT6Ligand/IonBETA-LACTOSE
3MG3Ligand/IonMAGNESIUM ION
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
3MG-1Ligand/IonMAGNESIUM ION
4SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
3MG-1Ligand/IonMAGNESIUM ION
4SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
3MG-1Ligand/IonMAGNESIUM ION
4SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
3MG-1Ligand/IonMAGNESIUM ION
4SO4-1Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:72 , GLN A:73 , HOH A:310 , GLY B:54 , HOH B:377 , HOH B:394BINDING SITE FOR RESIDUE MG A 201
02AC2SOFTWARELYS A:37 , MET A:115 , GLU A:116 , ALA A:117 , HOH A:407BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWARETHR A:91 , PHE A:92 , ASP A:93 , ASP A:96 , THR A:98 , HOH A:332BINDING SITE FOR RESIDUE GOL A 203
04AC4SOFTWAREGLN A:73 , ARG A:74 , GLU A:75 , HOH A:472 , HOH B:377 , HIS F:105 , MG F:201 , HOH F:442 , HOH F:482BINDING SITE FOR RESIDUE GOL A 204
05AC5SOFTWAREHIS A:45 , ASN A:47 , ARG A:49 , ASN A:62 , TRP A:69 , GLU A:72 , ARG A:74 , HOH A:311 , HOH A:316 , HOH A:320 , HOH A:413 , HOH A:416 , HOH A:453 , HOH A:493 , GLU B:72 , LAT B:202 , HOH B:301 , HOH B:320BINDING SITE FOR RESIDUE LAT A 205
06AC6SOFTWAREHOH A:387 , HOH A:390 , GLN B:73 , ARG B:74 , GLU B:75 , HOH B:415 , HIS D:105 , HOH D:392 , HOH D:416BINDING SITE FOR RESIDUE GOL B 201
07AC7SOFTWAREGLU A:72 , LAT A:205 , HOH A:319 , HOH A:320 , HOH A:416 , HIS B:45 , ASN B:47 , ARG B:49 , ASN B:62 , TRP B:69 , GLU B:72 , ARG B:74 , HOH B:315 , HOH B:320 , HOH B:334 , HOH B:380 , HOH B:423BINDING SITE FOR RESIDUE LAT B 202
08AC8SOFTWAREASN A:9 , CYS C:3 , ASP C:124 , GLY C:125 , PHE C:127BINDING SITE FOR RESIDUE MG C 201
09AC9SOFTWAREGLN C:73 , ARG C:74 , GLU C:75 , HIS C:105 , HOH C:335 , HOH C:364 , HOH C:398 , HOH C:438 , HOH E:509BINDING SITE FOR RESIDUE GOL C 202
10BC1SOFTWAREHIS C:45 , ASN C:47 , ARG C:49 , ASN C:62 , TRP C:69 , GLU C:72 , ARG C:74 , HOH C:315 , HOH C:318 , HOH C:322 , HOH C:323 , HOH C:346 , HOH C:432 , HOH C:455 , GLU E:72 , LAT E:203 , HOH E:308 , HOH E:328 , HOH E:358BINDING SITE FOR RESIDUE LAT C 203
11BC2SOFTWAREHIS D:45 , ASN D:47 , ARG D:49 , ASN D:62 , TRP D:69 , GLU D:72 , ARG D:74 , HOH D:315 , HOH D:325 , HOH D:339 , HOH D:349 , HOH D:483 , GLU F:72 , LAT F:203 , HOH F:311 , HOH F:314 , HOH F:352BINDING SITE FOR RESIDUE LAT D 201
12BC3SOFTWARELYS E:37 , ASN E:114 , MET E:115 , GLU E:116 , ALA E:117 , HOH E:401 , HOH E:508BINDING SITE FOR RESIDUE SO4 E 201
13BC4SOFTWAREGLN E:73 , ARG E:74 , GLU E:75 , HIS E:105 , HOH E:329 , HOH E:394 , HOH E:397 , HOH E:415 , HOH E:457BINDING SITE FOR RESIDUE GOL E 202
14BC5SOFTWAREGLU C:72 , LAT C:203 , HOH C:312 , HOH C:318 , HIS E:45 , ASN E:47 , ARG E:49 , ASN E:62 , GLU E:72 , ARG E:74 , HOH E:303 , HOH E:308 , HOH E:322 , HOH E:349 , HOH E:358 , HOH E:403 , HOH E:407BINDING SITE FOR RESIDUE LAT E 203
15BC6SOFTWAREGOL A:204 , HOH A:408 , HOH A:412 , THR F:76 , ALA F:77BINDING SITE FOR RESIDUE MG F 201
16BC7SOFTWAREHIS A:105 , HOH A:423 , HOH D:301 , GLN F:73 , ARG F:74 , GLU F:75 , HOH F:386 , HOH F:484 , HOH F:516BINDING SITE FOR RESIDUE GOL F 202
17BC8SOFTWAREGLU D:72 , LAT D:201 , HOH D:325 , HOH D:327 , HIS F:45 , ASN F:47 , ARG F:49 , ASN F:62 , TRP F:69 , GLU F:72 , ARG F:74 , HOH F:311 , HOH F:344 , HOH F:352 , HOH F:436 , HOH F:438 , HOH F:480 , HOH F:500BINDING SITE FOR RESIDUE LAT F 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NO4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NO4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NO4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NO4)

(-) Exons   (0, 0)

(no "Exon" information available for 4NO4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 A   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 B   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    


Chain C from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 C   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    


Chain D from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 D   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    


Chain E from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 E   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    


Chain F from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........eeeeeeee......eeeeeeee..eeeeeeeeeeee..eeeeeeeeeee..ee...eee.........eeeeeeee...eeeee.....eeeee.........eeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no4 F   2 ACGLVASNLNAKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE 135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NO4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NO4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NO4)

(-) Gene Ontology  (29, 29)

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        LEG1_RAT | P11762: 3m2m 4ga9

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