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(-) Description

Title :  PERIPLASMIC DOMAIN OF THE RISS SENSOR PROTEIN FROM BURKHOLDERIA PSEUDOMALLEI, IODIDE PHASED AT NEUTRAL PH
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  10 Feb 10  (Deposition) - 16 Jun 10  (Release) - 16 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Niaid, Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Burkholderia, Melioidosis, Ph, Sensor Protein, Histidine Kinase, Iodide Phased, Atp-Binding, Kinase, Membrane, Nucleotide- Binding, Phosphoprotein, Transferase, Transmembrane, Two-Component Regulatory System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. E. Edwards, J. Abendroth, B. L. Staker, I. Phan, P. Myler, R. Stacy, L. Stewart, S. I. Miller, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Structural Basis For Ph Sensing By The Periplsamic Domain Of The Riss Histidine Kinase From Burkholderia Pseudomallei
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SENSOR PROTEIN
    ChainsA, B
    EC Number2.7.13.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypeAVA0421
    FragmentUNP RESIDUES 37 TO 158
    GeneBPSL2095
    Organism CommonPSEUDOMONAS PSEUDOMALLEI
    Organism ScientificBURKHOLDERIA PSEUDOMALLEI
    Organism Taxid28450
    Strain1710B

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1IOD5Ligand/IonIODIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:41 , LEU A:101 , ASP A:105 , ARG B:66BINDING SITE FOR RESIDUE IOD A 1
2AC2SOFTWARELEU A:45 , ARG A:109BINDING SITE FOR RESIDUE IOD A 2
3AC3SOFTWAREHOH A:156 , HOH B:165BINDING SITE FOR RESIDUE IOD B 3
4AC4SOFTWAREASP A:122BINDING SITE FOR RESIDUE IOD A 4
5AC5SOFTWARESER B:119 , ASP B:122BINDING SITE FOR RESIDUE IOD B 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LR5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LR5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LR5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LR5)

(-) Exons   (0, 0)

(no "Exon" information available for 3LR5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with Q63T74_BURPS | Q63T74 from UniProtKB/TrEMBL  Length:452

    Alignment length:119
                                    45        55        65        75        85        95       105       115       125       135       145         
         Q63T74_BURPS    36 QSFRVIEREPRAQRVALQLVAIVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPREKTDKFKLQPDESVNRLIEHDIRSRLGDDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLD 154
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhheeeee......eee...hhhhhhhhhhhhhhhh....eeeee..eeeeeeeeee..eeeeeee.hhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3lr5 A  29 MSFRVIEREPRAQRVALQLVAIVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPREKTDKFKLQPDESVNRLIEHDIRSRLGDDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLD 147
                                    38        48        58        68        78        88        98       108       118       128       138         

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with Q63T74_BURPS | Q63T74 from UniProtKB/TrEMBL  Length:452

    Alignment length:126
                                    42        52        62        72        82        92       102       112       122       132       142       152      
         Q63T74_BURPS    33 AWFQSFRVIEREPRAQRVALQLVAIVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPREKTDKFKLQPDESVNRLIEHDIRSRLGDDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLDTVTG 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......---hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeee......ee....hhhhhhhhhhhhhhhh....eeeee..eeeeeeeeee..eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lr5 B   7 AHHHHHH---REPRAQRVALQLVAIVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPREKTDKFKLQPDESVNRLIEHDIRSRLGDDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLDTVTG 151
                                  |  -|       45        55        65        75        85        95       105       115       125       135       145      
                                 13  36                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LR5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LR5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3LR5)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q63T74_BURPS | Q63T74)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q63T74_BURPS | Q63T743lr0 3lr3 3lr4

(-) Related Entries Specified in the PDB File

3lr0 IODIDE PHASED AT LOW PH
3lr3 NATIVE AT LOW PH
3lr4 BARIUM PHASED AT LOW PH RELATED ID: BUPSA.00863.I RELATED DB: TARGETDB FULL LENGTH RISS SENSOR PROTEIN