Chain A from PDB Type:PROTEIN Length:90
aligned with SNRPA_HUMAN | P09012 from UniProtKB/Swiss-Prot Length:282
Alignment length:90
16 26 36 46 56 66 76 86 96
SNRPA_HUMAN 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
SCOP domains d3l3ca_ A: Splicesomal U1A protein SCOP domains
CATH domains 3l3cA00 A:7-96 [code=3.30.70.330, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ....eeeee......hhhhhhhhhhhhhhhhh.eeeeee.........eeeee.hhhhhhhhhhhhh..ee..ee.eeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---RRM PDB: A:10-89 UniProt: 10-89 ------- PROSITE
Transcript 1 (1) Exon 1.1 ---------------------------------------------------------Exon 1.3 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: A:25-82 UniProt: 25-82 -------------- Transcript 1 (2)
3l3c A 7 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
16 26 36 46 56 66 76 86 96
Chain B from PDB Type:PROTEIN Length:90
aligned with SNRPA_HUMAN | P09012 from UniProtKB/Swiss-Prot Length:282
Alignment length:90
16 26 36 46 56 66 76 86 96
SNRPA_HUMAN 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
SCOP domains d3l3cb_ B: Splicesomal U1A protein SCOP domains
CATH domains 3l3cB00 B:7-96 [code=3.30.70.330, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ....eeeee......hhhhhhhhhhhhhhhhh.eeeeee.........eeeee.hhhhhhhhhhhh...ee..ee.eeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---RRM PDB: B:10-89 UniProt: 10-89 ------- PROSITE
Transcript 1 (1) Exon 1.1 ---------------------------------------------------------Exon 1.3 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: B:25-82 UniProt: 25-82 -------------- Transcript 1 (2)
3l3c B 7 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
16 26 36 46 56 66 76 86 96
Chain C from PDB Type:PROTEIN Length:90
aligned with SNRPA_HUMAN | P09012 from UniProtKB/Swiss-Prot Length:282
Alignment length:90
16 26 36 46 56 66 76 86 96
SNRPA_HUMAN 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
SCOP domains d3l3cc_ C: Splicesomal U1A protein SCOP domains
CATH domains 3l3cC00 C:7-96 [code=3.30.70.330, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ....eeeee......hhhhhhhhhhhhhh....eeeeee.........eeeee.hhhhhhhhhhhhh..ee..ee.eeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---RRM PDB: C:10-89 UniProt: 10-89 ------- PROSITE
Transcript 1 (1) Exon 1.1 ---------------------------------------------------------Exon 1.3 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: C:25-82 UniProt: 25-82 -------------- Transcript 1 (2)
3l3c C 7 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
16 26 36 46 56 66 76 86 96
Chain D from PDB Type:PROTEIN Length:90
aligned with SNRPA_HUMAN | P09012 from UniProtKB/Swiss-Prot Length:282
Alignment length:90
16 26 36 46 56 66 76 86 96
SNRPA_HUMAN 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
SCOP domains d3l3cd_ D: Splicesomal U1A protein SCOP domains
CATH domains 3l3cD00 D:7-96 [code=3.30.70.330, no name defined] CATH domains
Pfam domains (1) -----RRM_1-3l3cD01 D:12-83 ------------- Pfam domains (1)
Pfam domains (2) -----RRM_1-3l3cD02 D:12-83 ------------- Pfam domains (2)
Pfam domains (3) -----RRM_1-3l3cD03 D:12-83 ------------- Pfam domains (3)
Pfam domains (4) -----RRM_1-3l3cD04 D:12-83 ------------- Pfam domains (4)
Sec.struct. author ....eeeee......hhhhhhhhh..hhhhh..eeeeee.........eeeee.hhhhhhhhhhhh..........eeee.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ---RRM PDB: D:10-89 UniProt: 10-89 ------- PROSITE
Transcript 1 (1) Exon 1.1 ---------------------------------------------------------Exon 1.3 Transcript 1 (1)
Transcript 1 (2) ------------------Exon 1.2 PDB: D:25-82 UniProt: 25-82 -------------- Transcript 1 (2)
3l3c D 7 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
16 26 36 46 56 66 76 86 96
Chain E from PDB Type:RNA Length:13
3l3c E -1 AaGCGCCAGAACU 11
| 8
0-A2M
Chain F from PDB Type:RNA Length:13
3l3c F -1 AaGCGCCAGAACU 11
| 8
0-A2M
Chain G from PDB Type:RNA Length:13
3l3c G -1 AaGCGCCAGAACU 11
| 8
0-A2M
Chain H from PDB Type:RNA Length:13
3l3c H -1 AaGCGCCAGAACU 11
| 8
0-A2M
Chain P from PDB Type:RNA Length:141
3l3c P 12 gGCACCAUUGCACUCCGGUGCCAGUUGACGAGGUGGGGUUUAUCGAGAUUUCGGCGGAUGACUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUGUGAUGA 141
| ||17E||||||| 20 30 40 50 60 70 80 90 100 110 120 130 140
12-GTPA||||||17J||
17B||||||17K|
17C||||||17L
17D|||||
17E||||
17F|||
17G||
17H|
17I
Chain Q from PDB Type:RNA Length:141
3l3c Q 1 gGCACCAUUGCACUCCGGUGCCAGUUGACGAGGUGGGGUUUAUCGAGAUUUCGGCGGAUGACUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUGUGAUGA 141
| |||17E||||||| 20 30 40 50 60 70 80 90 100 110 120 130 140
1-GTP||||||17I|||
17A||||||17J||
17B||||||17K|
17C||||| 17L
17D||||
17E|||
17F||
17G|
17H
Chain R from PDB Type:RNA Length:141
3l3c R 1 gGCACCAUUGCACUCCGGUGCCAGUUGACGAGGUGGGGUUUAUCGAGAUUUCGGCGGAUGACUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUGUGAUGA 141
| |||17E||||||| 20 30 40 50 60 70 80 90 100 110 120 130 140
1-GTP||||||17I|||
17A||||||17J||
17B||||||17K|
17C||||| 17L
17D||||
17E|||
17F||
17G|
17H
Chain S from PDB Type:RNA Length:141
3l3c S 1 gGCACCAUUGCACUCCGGUGCCAGUUGACGAGGUGGGGUUUAUCGAGAUUUCGGCGGAUGACUCCCGGUUGUUCAUCACAACCGCAAGCUUUUACUUAAAUCAUUAAGGUGACUUAGUGGACAAAGGUGAAAGUGUGAUGA 141
| ||||10||||||| 20 30 40 50 60 70 80 90 100 110 120 130 140
1-GTP||||||17I|||
17A||||||17J||
17B||||||17K|
17C||||| 17L
17D||||
10|||
17F||
17G|
17H
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |