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(-) Description

Title :  CRYSTAL STRUCTURE OF A SUSD SUPERFAMILY PROTEIN (BF_0597) FROM BACTEROIDES FRAGILIS AT 2.05 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Dec 09  (Deposition) - 12 Jan 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd Superfamily Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Yp_210307. 1) From Bacteroides Fragilis Nctc 9343 At 2. 05 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD SUPERFAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 25-464
    Gene: BF0597
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343
    Synonym: PUTATIVE MEMBRANE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 39)

Asymmetric/Biological Unit (4, 39)
No.NameCountTypeFull Name
1ACT9Ligand/IonACETATE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4ZN9Ligand/IonZINC ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:142 , HIS A:220 , HOH A:621 , HOH A:644BINDING SITE FOR RESIDUE ZN A 1
02AC2SOFTWAREACT A:17 , ACT A:18 , GLU A:130 , GLU A:239BINDING SITE FOR RESIDUE ZN A 2
03AC3SOFTWAREGLU A:257 , HOH A:509 , HOH A:513 , HOH A:514 , HOH A:515 , HOH A:876BINDING SITE FOR RESIDUE ZN A 3
04AC4SOFTWAREACT A:13 , ASP A:209 , GLU A:211 , ASP A:280BINDING SITE FOR RESIDUE ZN A 4
05AC5SOFTWAREACT A:12 , HIS A:428 , GLU A:434 , HOH A:505 , HOH A:534 , HOH A:536BINDING SITE FOR RESIDUE ZN A 5
06AC6SOFTWAREASP A:137 , HOH A:481 , HOH A:634 , HOH A:674 , HOH A:1044BINDING SITE FOR RESIDUE ZN A 6
07AC7SOFTWAREACT A:10 , GLU A:126 , HIS A:197 , HOH A:952BINDING SITE FOR RESIDUE ZN A 7
08AC8SOFTWAREEDO A:20 , HOH A:506 , HOH A:627 , HOH A:944BINDING SITE FOR RESIDUE ZN A 8
09AC9SOFTWAREASP A:313 , HOH A:800 , HOH A:840BINDING SITE FOR RESIDUE ZN A 9
10BC1SOFTWAREZN A:7 , GLN A:123 , GLU A:126 , LEU A:173 , LEU A:175 , HIS A:197 , HOH A:952BINDING SITE FOR RESIDUE ACT A 10
11BC2SOFTWAREGLY A:380 , ARG A:381 , HOH A:876BINDING SITE FOR RESIDUE ACT A 11
12BC3SOFTWAREZN A:5 , HIS A:428 , GLU A:434 , GLY A:441 , PRO A:442 , SER A:443 , HOH A:536BINDING SITE FOR RESIDUE ACT A 12
13BC4SOFTWAREZN A:4 , ASP A:209 , GLU A:211 , ASP A:280 , HOH A:531 , HOH A:533BINDING SITE FOR RESIDUE ACT A 13
14BC5SOFTWAREGLU A:257 , ASP A:258 , LYS A:320BINDING SITE FOR RESIDUE ACT A 14
15BC6SOFTWARETHR A:318 , ILE A:323 , HOH A:539 , HOH A:897BINDING SITE FOR RESIDUE ACT A 15
16BC7SOFTWAREACT A:18 , ASN A:238 , TRP A:240 , ASP A:241 , HOH A:655BINDING SITE FOR RESIDUE ACT A 16
17BC8SOFTWAREZN A:2 , ACT A:18 , EDO A:23 , GLU A:130 , GLU A:239BINDING SITE FOR RESIDUE ACT A 17
18BC9SOFTWAREZN A:2 , ACT A:16 , ACT A:17 , GLU A:130 , GLU A:239 , LYS A:242 , HOH A:612BINDING SITE FOR RESIDUE ACT A 18
19CC1SOFTWAREGLU A:248 , THR A:370 , LEU A:374 , EDO A:467BINDING SITE FOR RESIDUE EDO A 19
20CC2SOFTWAREZN A:8 , ASN A:435 , HOH A:506 , HOH A:511 , HOH A:944BINDING SITE FOR RESIDUE EDO A 20
21CC3SOFTWAREGLY A:366 , GLY A:367 , GLU A:368 , HOH A:730BINDING SITE FOR RESIDUE EDO A 21
22CC4SOFTWARETYR A:152 , ARG A:232 , GLU A:352 , ASP A:356 , LYS A:408 , ILE A:420 , ASP A:421 , ARG A:424 , HOH A:658BINDING SITE FOR RESIDUE EDO A 22
23CC5SOFTWAREACT A:17 , GLU A:130 , GLU A:239 , HOH A:552 , HOH A:815BINDING SITE FOR RESIDUE EDO A 23
24CC6SOFTWARETYR A:263 , ALA A:324 , PHE A:325 , MSE A:333 , LYS A:334 , HOH A:486 , HOH A:894BINDING SITE FOR RESIDUE EDO A 465
25CC7SOFTWARELEU A:199 , LEU A:202 , GLU A:203 , LYS A:230BINDING SITE FOR RESIDUE EDO A 466
26CC8SOFTWAREEDO A:19 , GLU A:248 , TYR A:350 , LEU A:354 , LEU A:357 , HOH A:508 , HOH A:630 , HOH A:765BINDING SITE FOR RESIDUE EDO A 467
27CC9SOFTWARELEU A:316 , SER A:396 , ASP A:398 , ALA A:399 , HOH A:808 , HOH A:861 , HOH A:872BINDING SITE FOR RESIDUE EDO A 468

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L22)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:265 -Pro A:266

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L22)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L22)

(-) Exons   (0, 0)

(no "Exon" information available for 3L22)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
 aligned with Q5LHN1_BACFN | Q5LHN1 from UniProtKB/TrEMBL  Length:464

    Alignment length:429
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455         
         Q5LHN1_BACFN    36 DIFTSPTRIEATLNGLYAAIKNTGTKSLMGGKSYLVFDNRGDDVINISNNLVTLFNTYNMNVGITDAENADTWTYAYLAINKVNTFLQSLEGAREVAGENYDRYVQEAKFVRALAYYYLNNLYPTPYSVNPDAKSVPLRLTAEAGTENNNMPRSTVKQIYEHILSDLENISALDTEVNTYTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVTGYSLPEDVTLIYKAPYFSQESIFSLPMADTNIPNTQQSLAEYYYDGKIMLIDTKSGIMSKPDYSLATDKRIIAFKGEKDLLMKFTDAKTKLQWVPIFRYAETLLDLAECYANKAGGEATAKSLLKQVRGRSVDAATDPLNIDNLSGDALKEAIYNEKRLEFIGEGIRGIDIMRRGEHFIKVGENETINVGPSDEKYTWPIPQVELLLNKDINK 464
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains SusD-like_3-3l22A02 A:36-235                                                                                                                                                                            -----------------------------------------------------------------------------------------------SusD-3l22A01 A:331-464                                                                                                                 Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh..eee...hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhh...........hhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhh..........hhhhh.......eeeee............hhhhhhh....eee....hhhhhhhhh...hhhhhhhhhhhhh.............eeeeehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...eeee....eeee...hhhhh...hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l22 A  36 DIFTSPTRIEATLNGLYAAIKNTGTKSLmGGKSYLVFDNRGDDVINISNNLVTLFNTYNmNVGITDAENADTWTYAYLAINKVNTFLQSLEGAREVAGENYDRYVQEAKFVRALAYYYLNNLYPTPYSVNPDAKSVPLRLTAEAGTENNNmPRSTVKQIYEHILSDLENISALDTEVNTYTGVTHATQAAANmLKmRVYmAmNEWDKAITAGELVTGYSLPEDVTLIYKAPYFSQESIFSLPmADTNIPNTQQSLAEYYYDGKImLIDTKSGImSKPDYSLATDKRIIAFKGEKDLLmKFTDAKTKLQWVPIFRYAETLLDLAECYANKAGGEATAKSLLKQVRGRSVDAATDPLNIDNLSGDALKEAIYNEKRLEFIGEGIRGIDImRRGEHFIKVGENETINVGPSDEKYTWPIPQVELLLNKDINK 464
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185|      195       205       215       225  |  | 235 |     245       255       265       275  |    285       295    |  305   |   315       325       335       345       355       365       375       385       395       405       415       425       435       445       455         
                                                       64-MSE                         95-MSE                                                                                    186-MSE                                   228-MSE  | |                                      278-MSE               300-MSE  309-MSE                 333-MSE                                                                                   423-MSE                                     
                                                                                                                                                                                                                             231-MSE |                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                 235-MSE                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                   237-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3L22)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3L22)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5LHN1_BACFN | Q5LHN1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  3l22
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