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3L22
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SUSD SUPERFAMILY PROTEIN (BF_0597) FROM BACTEROIDES FRAGILIS AT 2.05 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
14 Dec 09 (Deposition) - 12 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Susd Superfamily Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Yp_210307. 1) From Bacteroides Fragilis Nctc 9343 At 2. 05 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(4, 39)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
9
Ligand/Ion
ACETATE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
9
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:142 , HIS A:220 , HOH A:621 , HOH A:644
BINDING SITE FOR RESIDUE ZN A 1
02
AC2
SOFTWARE
ACT A:17 , ACT A:18 , GLU A:130 , GLU A:239
BINDING SITE FOR RESIDUE ZN A 2
03
AC3
SOFTWARE
GLU A:257 , HOH A:509 , HOH A:513 , HOH A:514 , HOH A:515 , HOH A:876
BINDING SITE FOR RESIDUE ZN A 3
04
AC4
SOFTWARE
ACT A:13 , ASP A:209 , GLU A:211 , ASP A:280
BINDING SITE FOR RESIDUE ZN A 4
05
AC5
SOFTWARE
ACT A:12 , HIS A:428 , GLU A:434 , HOH A:505 , HOH A:534 , HOH A:536
BINDING SITE FOR RESIDUE ZN A 5
06
AC6
SOFTWARE
ASP A:137 , HOH A:481 , HOH A:634 , HOH A:674 , HOH A:1044
BINDING SITE FOR RESIDUE ZN A 6
07
AC7
SOFTWARE
ACT A:10 , GLU A:126 , HIS A:197 , HOH A:952
BINDING SITE FOR RESIDUE ZN A 7
08
AC8
SOFTWARE
EDO A:20 , HOH A:506 , HOH A:627 , HOH A:944
BINDING SITE FOR RESIDUE ZN A 8
09
AC9
SOFTWARE
ASP A:313 , HOH A:800 , HOH A:840
BINDING SITE FOR RESIDUE ZN A 9
10
BC1
SOFTWARE
ZN A:7 , GLN A:123 , GLU A:126 , LEU A:173 , LEU A:175 , HIS A:197 , HOH A:952
BINDING SITE FOR RESIDUE ACT A 10
11
BC2
SOFTWARE
GLY A:380 , ARG A:381 , HOH A:876
BINDING SITE FOR RESIDUE ACT A 11
12
BC3
SOFTWARE
ZN A:5 , HIS A:428 , GLU A:434 , GLY A:441 , PRO A:442 , SER A:443 , HOH A:536
BINDING SITE FOR RESIDUE ACT A 12
13
BC4
SOFTWARE
ZN A:4 , ASP A:209 , GLU A:211 , ASP A:280 , HOH A:531 , HOH A:533
BINDING SITE FOR RESIDUE ACT A 13
14
BC5
SOFTWARE
GLU A:257 , ASP A:258 , LYS A:320
BINDING SITE FOR RESIDUE ACT A 14
15
BC6
SOFTWARE
THR A:318 , ILE A:323 , HOH A:539 , HOH A:897
BINDING SITE FOR RESIDUE ACT A 15
16
BC7
SOFTWARE
ACT A:18 , ASN A:238 , TRP A:240 , ASP A:241 , HOH A:655
BINDING SITE FOR RESIDUE ACT A 16
17
BC8
SOFTWARE
ZN A:2 , ACT A:18 , EDO A:23 , GLU A:130 , GLU A:239
BINDING SITE FOR RESIDUE ACT A 17
18
BC9
SOFTWARE
ZN A:2 , ACT A:16 , ACT A:17 , GLU A:130 , GLU A:239 , LYS A:242 , HOH A:612
BINDING SITE FOR RESIDUE ACT A 18
19
CC1
SOFTWARE
GLU A:248 , THR A:370 , LEU A:374 , EDO A:467
BINDING SITE FOR RESIDUE EDO A 19
20
CC2
SOFTWARE
ZN A:8 , ASN A:435 , HOH A:506 , HOH A:511 , HOH A:944
BINDING SITE FOR RESIDUE EDO A 20
21
CC3
SOFTWARE
GLY A:366 , GLY A:367 , GLU A:368 , HOH A:730
BINDING SITE FOR RESIDUE EDO A 21
22
CC4
SOFTWARE
TYR A:152 , ARG A:232 , GLU A:352 , ASP A:356 , LYS A:408 , ILE A:420 , ASP A:421 , ARG A:424 , HOH A:658
BINDING SITE FOR RESIDUE EDO A 22
23
CC5
SOFTWARE
ACT A:17 , GLU A:130 , GLU A:239 , HOH A:552 , HOH A:815
BINDING SITE FOR RESIDUE EDO A 23
24
CC6
SOFTWARE
TYR A:263 , ALA A:324 , PHE A:325 , MSE A:333 , LYS A:334 , HOH A:486 , HOH A:894
BINDING SITE FOR RESIDUE EDO A 465
25
CC7
SOFTWARE
LEU A:199 , LEU A:202 , GLU A:203 , LYS A:230
BINDING SITE FOR RESIDUE EDO A 466
26
CC8
SOFTWARE
EDO A:19 , GLU A:248 , TYR A:350 , LEU A:354 , LEU A:357 , HOH A:508 , HOH A:630 , HOH A:765
BINDING SITE FOR RESIDUE EDO A 467
27
CC9
SOFTWARE
LEU A:316 , SER A:396 , ASP A:398 , ALA A:399 , HOH A:808 , HOH A:861 , HOH A:872
BINDING SITE FOR RESIDUE EDO A 468
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_SusD_3l22A01 (A:331-464)
2a: PFAM_SusD_like_3_3l22A02 (A:36-235)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
SusD
(11)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(3)
1a
SusD-3l22A01
A:331-464
Family
:
SusD-like_3
(11)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(3)
2a
SusD-like_3-3l22A02
A:36-235
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Chain A
Asymmetric Unit 1
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