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(-) Description

Title :  E185A MUTANT OF PEPTIDOGLYCAN HYDROLASE FROM SPHINGOMONAS SP. A1
 
Authors :  Y. Maruyama, A. Ochiai, T. Itoh, B. Mikami, W. Hashimoto, K. Murata
Date :  04 Oct 09  (Deposition) - 14 Jul 10  (Release) - 04 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Maruyama, A. Ochiai, T. Itoh, B. Mikami, W. Hashimoto, K. Murata
Mutational Studies Of The Peptidoglycan Hydrolase Flgj Of Sphingomonas Sp. Strain A1
J. Basic Microbiol. V. 50 311 2010
PubMed-ID: 20586063  |  Reference-DOI: 10.1002/JOBM.200900249

(-) Compounds

Molecule 1 - PEPTIDOGLYCAN HYDROLASE FLGJ
    Chains: A
    EC Number: 3.2.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 152-313
    Gene: FLGJ
    Mutation: YES
    Organism Scientific: SPHINGOMONAS SP. A1
    Organism Taxid: 90322

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:80 , HOH A:134 , ALA A:153 , GLN A:154 , ARG A:303BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREHOH A:106 , SER A:257 , PRO A:258 , ARG A:259BINDING SITE FOR RESIDUE SO4 A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K3T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K3T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K3T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K3T)

(-) Exons   (0, 0)

(no "Exon" information available for 3K3T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with B7XH69_9SPHN | B7XH69 from UniProtKB/TrEMBL  Length:313

    Alignment length:159
                                   162       172       182       192       202       212       222       232       242       252       262       272       282       292       302         
         B7XH69_9SPHN   153 PQAFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGKSQIRNKDGTPSYNLFNIKAGSNWTGKVVEARTVEYENGQRKVRVERFRAYDSYEQAFQDYADLVGNSPRYAKVAGKTDGHAFARALQEGGYATDPSYADKLARVINGNALRQRLMASAASA 311
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------Glucosaminidase-3k3tA01 A:160-300                                                                                                            ----------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh............................eeeeeee.-------..eeeeeee..hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k3t A 153 AQAFVDATWPQAAKAAQSLGVPAHFLVAQAALATGWGKSQIRNKDGTPSYNLFNIKAGSNWTGKVVEARTV-------KVRVERFRAYDSYEQAFQDYADLVGNSPRYAKVAGKTDGHAFARALQEGGYATDPSYADKLARVINGNALRQRLMASAASA 311
                                   162       172       182       192       202       212       222|      232       242       252       262       272       282       292       302         
                                                                                                223     231
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K3T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K3T)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Lysozyme (266)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (B7XH69_9SPHN | B7XH69)
molecular function
    GO:0004040    amidase activity    Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
biological process
    GO:0044780    bacterial-type flagellum assembly    The assembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B7XH69_9SPHN | B7XH69: 2zyc 3vwo

(-) Related Entries Specified in the PDB File

2zyc PEPTIDOGLYCAN HYDROLASE FROM SPHINGOMONAS SP. A1