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(-) Description

Title :  CRYSTAL STRUCTURE OF INFECTIOUS BACULOVIRUS POLYHEDRA
 
Authors :  F. Coulibaly, E. Chiu, P. Metcalf
Date :  16 Sep 09  (Deposition) - 08 Dec 09  (Release) - 12 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Jelly-Roll, Disulfide Bond, Domain Swapping, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Coulibaly, E. Chiu, S. Gutmann, C. Rajendran, P. W. Haebel, K. Ikeda, H. Mori, V. K. Ward, C. Schulze-Briese, P. Metcalf
The Atomic Structure Of Baculovirus Polyhedra Reveals The Independent Emergence Of Infectious Crystals In Dna And Rna Viruses
Proc. Natl. Acad. Sci. Usa V. 106 22205 2009
PubMed-ID: 20007786  |  Reference-DOI: 10.1073/PNAS.0910686106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Organism Scientific: WISEANA SIGNATA NPV
    Organism Taxid: 65124
    Other Details: CRYSTALS WERE DIRECTLY PURIFIED FROM INSECTS (LARVAE OF PORINA MOTHS) NATURALLY INFECTED BY A BACULOVIRUS (WISEANA SPP. NUCLEOPOLYHEDROSIS VIRUS)

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1SO412Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:31BINDING SITE FOR RESIDUE SO4 A 244

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:131 -A:131

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:106 -Pro A:107
2Gly A:240 -Pro A:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JVB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JVB)

(-) Exons   (0, 0)

(no "Exon" information available for 3JVB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with O37157_9ABAC | O37157 from UniProtKB/TrEMBL  Length:243

    Alignment length:234
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239    
         O37157_9ABAC    10 GKTYVYDNRYWKNLGGVIKNAKRRKHEEEQEKVEREFDSLDKYLVAEDPFCGPGKNQKLTLFKEIRNIKPDTMKLIVNWSGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVINMRSTKPNRCFRFLAQHALRCDPDYVPHEIIRIVEPSYVGNNEYRISLAKRGGGCPIMNLHLEYTNSFEHFINKVIWENFYKPIVYIGTDSAEDEEVLFEVSLVFKIKEFAPDAPLFSGPAY 243
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains Polyhedrin-3jvbA01 A:10-242                                                                                                                                                                                                              - Pfam domains
         Sec.struct. author ..eeee..eeeehhhhhhhhhhhhhhh---hhhhhhhhhhh.............eeeeeeeeeeeeee...eeee....hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeee........eeeeeee.----.....eee....ee....eeeee..---------------..hhhhhhh--------.eeeeeee.....eeeeeeeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jvb A  10 GKTYVYDNRYWKNLGGVIKNAKRRKHE---EKVEREFDSLDKYLVAEDPFCGPGKNQKLTLFKEIRNIKPDTMKLIVNWSGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVINMRSTKPNRCFRFLAQHALR----YVPHEIIRIVEPSYVGNNEYRISLA---------------TNSFEHFIN--------KPIVYIGTDSAEDEEVLFEVSLVFKIKEFAPDAPLFSGPAY 243
                                    19        29      |  -|       49        59        69        79        89        99       109       119       129       139 |    |149       159       169|        -      |189    |    -   |   209       219       229       239    
                                                     36  40                                                                                                  141  146                     170             186     194      203
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JVB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JVB)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: Polyhedrin] (4)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (O37157_9ABAC | O37157)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039679    viral occlusion body    A crystalline protein matrix surrounding the nucleocapsids of some insect viruses after their release in the environment. Produced in the host cell, the occlusion body protects the infectious virion after death of the host.

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 Related Entries

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(-) Related Entries Specified in the PDB File

3jw6 ACMNPV POLYHEDRIN (G25D MUTANT)