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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTM

Authors :   S. Tanaka, M. R. Sawaya, T. O. Yeates

Date :   07 Jul 09 (Deposition) - 12 Jan 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Tanaka, M. R. Sawaya, T. O. Yeates
Structure And Mechanisms Of A Protein-Based Organelle In Escherichia Coli.
Science V. 327 81 2010
PubMed-ID: 20044574 | Reference-DOI: 10.1126/SCIENCE.1179513

Molecule 1 - ETHANOLAMINE UTILIZATION PROTEIN EUTM
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	BL21(DE3)GOLD
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	B2457, CCHA, EUTM, JW2441, YFFZ
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K-12

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:38 , GLY B:38 , GLY C:37 , GLY C:38 , GLY D:38 , GLY E:38 , GLY F:37 , GLY F:38	BINDING SITE FOR RESIDUE SO4 A 106
2	AC2	SOFTWARE	LYS A:24 , ARG B:77 , HOH B:127 , SO4 D:106 , ARG E:77	BINDING SITE FOR RESIDUE SO4 B 106
3	AC3	SOFTWARE	ARG B:77 , SO4 B:106 , LYS D:24 , ARG E:77 , HOH E:123	BINDING SITE FOR RESIDUE SO4 D 106

(no "SS Bond" information available for 3I6P)

(no "Cis Peptide Bond" information available for 3I6P)

(no "SAP(SNP)/Variant" information available for 3I6P)

Asymmetric/Biological Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BACT_MICROCOMP	PS01139	Bacterial microcompartiments proteins signature.	EUTM_ECOLI	20-39	6	A:20-39 B:20-39 C:20-39 D:20-39 E:20-39 F:20-39

(no "Exon" information available for 3I6P)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pa_ A: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee.....hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p A  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pb_ B: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p B  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Chain C from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pc_ C: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh..eeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p C  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Chain D from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pd_ D: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh.eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee.....hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p D  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Chain E from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pe_ E: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p E  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Chain F from PDB  Type:PROTEIN  Length:90
 aligned with EUTM_ECOLI | P0ABF4 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            EUTM_ECOLI    1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
               SCOP domains d3i6pf_ F: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhhhhhhh..eeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhheeeeeeee....hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------BACT_MICROCOMP      --------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3i6p F  1 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGL 90
                                    10        20        30        40        50        60        70        80        90

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: CcmK-like (19)

Family: automated matches (5)

Protein domain: automated matches (5)

Escherichia coli K-12 [TaxId: 83333] (3)

1a	d3i6pa_	A:
1b	d3i6pb_	B:
1c	d3i6pc_	C:
1d	d3i6pd_	D:
1e	d3i6pe_	E:
1f	d3i6pf_	F:

(no "CATH Domain" information available for 3I6P)

(no "Pfam Domain" information available for 3I6P)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (EUTM_ECOLI | P0ABF4)

molecular function
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0046336	ethanolamine catabolic process	The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
cellular component
	GO:0031471	ethanolamine degradation polyhedral organelle	An organelle found in bacteria consisting of a proteinaceous coat containing enzymes for the degradation of ethanolamine whose purpose is the protection of the rest of the cell from the toxic acetaldehyde product of the enzyme ethanolamine ammonia lyase.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3i6p)

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	3i6p
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UniProtKB/Swiss-Prot
	EUTM_ECOLI \| P0ABF4	:	3mpw 3mpy

3i71	ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTK C-TERMINAL DOMAIN
3i82	ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTL CLOSED FORM
3i87	ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTL OPEN FORM
3i96	ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTS
3ia0	ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTS-G39V MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

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Related Entries Specified in the PDB File