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(-) Description

Title :  ETHANOLAMINE UTILIZATION MICROCOMPARTMENT SHELL SUBUNIT, EUTS
 
Authors :  S. Tanaka, M. R. Sawaya, T. O. Yeates
Date :  10 Jul 09  (Deposition) - 12 Jan 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Biol. Unit 2:  A,B,C  (1x)
Keywords :  Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Tanaka, M. R. Sawaya, T. O. Yeates
Structure And Mechanisms Of A Protein-Based Organelle In Escherichia Coli.
Science V. 327 81 2010
PubMed-ID: 20044574  |  Reference-DOI: 10.1126/SCIENCE.1179513

(-) Compounds

Molecule 1 - ETHANOLAMINE UTILIZATION PROTEIN EUTS
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: B2462, EUTS, JW2446, YPFE
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC
Biological Unit 2 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3NHE1Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL16Ligand/IonGLYCEROL
3NHE2Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3NHE1Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4SO41Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:39 , GLY A:81 , HOH A:127 , GLY C:39 , GLY C:81BINDING SITE FOR RESIDUE CL A 120
02AC2SOFTWAREPHE B:69 , LEU B:70 , GOL B:124 , HOH B:382BINDING SITE FOR RESIDUE GOL B 120
03AC3SOFTWAREHOH B:286 , THR C:109BINDING SITE FOR RESIDUE GOL B 121
04AC4SOFTWAREARG B:99 , HOH B:321 , HIS C:20 , SER C:111BINDING SITE FOR RESIDUE GOL B 122
05AC5SOFTWAREHIS B:24 , SER B:82 , VAL B:83BINDING SITE FOR RESIDUE GOL B 123
06AC6SOFTWAREPHE A:73 , ASP B:71 , PHE B:73 , GOL B:120 , GOL B:125 , HOH B:139 , HOH B:380 , HOH B:381BINDING SITE FOR RESIDUE GOL B 124
07AC7SOFTWAREPHE A:73 , ASP B:71 , PHE B:73 , GOL B:124BINDING SITE FOR RESIDUE GOL B 125
08AC8SOFTWARELYS B:61 , HOH B:150 , HOH B:160 , ILE C:33 , PHE C:69BINDING SITE FOR RESIDUE NHE C 120
09AC9SOFTWAREGLY A:68 , PHE A:69 , LYS B:32 , ARG C:72 , HOH C:157BINDING SITE FOR RESIDUE SO4 C 121
10BC1SOFTWAREILE C:22 , ALA C:23 , HIS C:24 , PRO C:25 , LEU C:29 , SER C:111 , LEU C:112 , GLU C:113BINDING SITE FOR RESIDUE GOL C 122
11BC2SOFTWARELEU C:60 , LYS C:61 , ALA C:62 , ALA C:63 , ASP C:64 , HOH C:161 , HOH C:269BINDING SITE FOR RESIDUE GOL C 123

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3I96)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Thr A:47 -Pro A:48
2Thr B:47 -Pro B:48
3Thr C:47 -Pro C:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3I96)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3I96)

(-) Exons   (0, 0)

(no "Exon" information available for 3I96)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with EUTS_ECOLI | P63746 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:109
                                                                                                                                   111   
                                    15        25        35        45        55        65        75        85        95       105     |   
           EUTS_ECOLI     6 IIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS---   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeeeeeee..hhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhh.eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3i96 A   6 IIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKSLEH 114
                                    15        25        35        45        55        65        75        85        95       105         


Chain B from PDB  Type:PROTEIN  Length:111
 aligned with EUTS_ECOLI | P63746 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
           EUTS_ECOLI     1 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 111
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee..eeeeeeeee..hhhhhhhhh.....eeeeeeeehhhhhhhhhhhhhhhh..eeeeee....eeeeeehhhhhhhhhhhhhhhhhhhhh......eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3i96 B   1 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 111
                                    10        20        30        40        50        60        70        80        90       100       110 


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with EUTS_ECOLI | P63746 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:109
                                                                                                                                    111  
                                    14        24        34        44        54        64        74        84        94       104      |  
           EUTS_ECOLI     5 RIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeeeeeee..hhhhhhhhh.....eeeeeeeehhhhhhhhhhhhhhhh.eeeee......eeeeeehhhhhhhhhhhhhhhhhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3i96 C   5 RIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKSLE 113
                                    14        24        34        44        54        64        74        84        94       104
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3I96)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3I96)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3I96)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (EUTS_ECOLI | P63746)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0046336    ethanolamine catabolic process    The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
    GO:0006580    ethanolamine metabolic process    The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
cellular component
    GO:0031471    ethanolamine degradation polyhedral organelle    An organelle found in bacteria consisting of a proteinaceous coat containing enzymes for the degradation of ethanolamine whose purpose is the protection of the rest of the cell from the toxic acetaldehyde product of the enzyme ethanolamine ammonia lyase.

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        EUTS_ECOLI | P63746: 3ia0

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