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(-) Description

Title :  CRYSTAL STRUCTURE OF MUCONATE LACTONIZING ENZYME FROM RUEGERIA POMEROYI.
 
Authors :  A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  07 Jul 09  (Deposition) - 14 Jul 09  (Release) - 09 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,E  (1x)
Biol. Unit 3:  D,G  (1x)
Biol. Unit 4:  F,H  (1x)
Keywords :  Structural Genomics, Nysgxrc, Targer 9468A, Muconate Lactonizing Enzyme, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo
Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MUCONATE CYCLOISOMERASE I
    Chains: A, B, C, D, E, F, G, H
    EC Number: 5.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CATB, SPO3667
    Organism Scientific: RUEGERIA POMEROYI
    Organism Taxid: 89184
    Synonym: MUCONATE LACTONIZING ENZYME

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   C E   
Biological Unit 3 (1x):    D  G 
Biological Unit 4 (1x):      F H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1MG8Ligand/IonMAGNESIUM ION
2NA8Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NA-1Ligand/IonSODIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:198 , GLU A:224 , ASP A:249 , HOH A:1011 , HOH A:1012 , HOH A:1013BINDING SITE FOR RESIDUE MG A 386
02AC2SOFTWAREARG A:239 , THR A:242 , HOH A:406 , HOH A:419 , HOH A:427 , HOH A:579BINDING SITE FOR RESIDUE NA A 387
03AC3SOFTWAREASP B:198 , GLU B:224 , ASP B:249 , HOH B:1021 , HOH B:1022 , HOH B:1023BINDING SITE FOR RESIDUE MG B 386
04AC4SOFTWAREARG B:239 , THR B:242 , HOH B:390 , HOH B:413 , HOH B:417 , HOH B:439BINDING SITE FOR RESIDUE NA B 387
05AC5SOFTWAREASP C:198 , GLU C:224 , ASP C:249 , HOH C:1031 , HOH C:1032 , HOH C:1033BINDING SITE FOR RESIDUE MG C 386
06AC6SOFTWAREARG C:239 , THR C:242 , HOH C:400 , HOH C:412 , HOH C:464 , HOH C:932BINDING SITE FOR RESIDUE NA C 387
07AC7SOFTWAREASP D:198 , GLU D:224 , ASP D:249 , HOH D:1041 , HOH D:1042 , HOH D:1043BINDING SITE FOR RESIDUE MG D 386
08AC8SOFTWAREARG D:239 , THR D:242 , HOH D:402 , HOH D:582 , HOH D:619 , HOH D:772BINDING SITE FOR RESIDUE NA D 387
09AC9SOFTWAREASP E:198 , GLU E:224 , ASP E:249 , HOH E:1051 , HOH E:1052 , HOH E:1053BINDING SITE FOR RESIDUE MG E 386
10BC1SOFTWAREARG E:239 , THR E:242 , HOH E:397 , HOH E:398 , HOH E:402 , HOH E:607BINDING SITE FOR RESIDUE NA E 387
11BC2SOFTWAREASP F:198 , GLU F:224 , ASP F:249 , HOH F:1061 , HOH F:1062BINDING SITE FOR RESIDUE MG F 386
12BC3SOFTWAREARG F:239 , THR F:242 , HOH F:396 , HOH F:404 , HOH F:428 , HOH F:664BINDING SITE FOR RESIDUE NA F 387
13BC4SOFTWAREASP G:198 , GLU G:224 , ASP G:249 , HOH G:1071 , HOH G:1072 , HOH G:1073BINDING SITE FOR RESIDUE MG G 386
14BC5SOFTWAREARG G:239 , THR G:242 , HOH G:399 , HOH G:430 , HOH G:448 , HOH G:808BINDING SITE FOR RESIDUE NA G 387
15BC6SOFTWAREASP H:198 , GLU H:224 , ASP H:249 , HOH H:1081 , HOH H:1082 , HOH H:1083 , HOH H:1085BINDING SITE FOR RESIDUE MG H 386
16BC7SOFTWAREARG H:239 , THR H:242 , HOH H:392 , HOH H:396 , HOH H:643 , HOH H:736BINDING SITE FOR RESIDUE NA H 387

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3I6E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3I6E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3I6E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3I6E)

(-) Exons   (0, 0)

(no "Exon" information available for 3I6E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6ea1 A:6-132 a              utomated matches                                                                                d3i6ea2 A:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e A   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6eb1 B:6-132 a              utomated matches                                                                                d3i6eb2 B:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh..........hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e B   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6ec1 C:6-132 a              utomated matches                                                                                d3i6ec2 C:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e C   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6ed1 D:6-132 a              utomated matches                                                                                d3i6ed2 D:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e D   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6ee1 E:6-132 a              utomated matches                                                                                d3i6ee2 E:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e E   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6ef1 F:6-132 a              utomated matches                                                                                d3i6ef2 F:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e F   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain G from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6eg1 G:6-132 a              utomated matches                                                                                d3i6eg2 G:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhhhh.....ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh..........hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e G   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37                                                                                                                                                                                                                                                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:356
 aligned with Q5LM96_RUEPO | Q5LM96 from UniProtKB/TrEMBL  Length:376

    Alignment length:370
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374
         Q5LM96_RUEPO     5 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 374
               SCOP domains d3i6eh1 H:6-132 a              utomated matches                                                                                d3i6eh2 H:133-375 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...--------------.eeeeeeeee....eeeeee........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.eeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.....ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh...eeeee..hhhhhh...........ee..eee...........hhhhhhhheee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i6e H   6 LEQKIIAMDLWHLALPV--------------CEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375
                                    15      |  -         - |      45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
                                           22             37
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: TIM beta/alpha-barrel (3956)
(-)
Superfamily: Enolase C-terminal domain-like (212)
(-)
Family: automated matches (102)
(-)
Protein domain: automated matches (102)
(-)
Ruegeria pomeroyi [TaxId: 89184] (1)
2ad3i6ea2A:133-375
2bd3i6eb2B:133-375
2cd3i6ec2C:133-375
2dd3i6ed2D:133-375
2ed3i6ee2E:133-375
2fd3i6ef2F:133-375
2gd3i6eg2G:133-375
2hd3i6eh2H:133-375

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3I6E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3I6E)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q5LM96_RUEPO | Q5LM96)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0018849    muconate cycloisomerase activity    Catalysis of the reaction: 2,5-dihydro-5-oxofuran-2-acetate = cis,cis-hexadienedioate.
biological process
    GO:0019439    aromatic compound catabolic process    The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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