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3I6E
Biol. Unit 4
Info
Asym.Unit (465 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (121 KB)
Biol.Unit 4 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUCONATE LACTONIZING ENZYME FROM RUEGERIA POMEROYI.
Authors
:
A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
07 Jul 09 (Deposition) - 14 Jul 09 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D,G (1x)
Biol. Unit 4: F,H (1x)
Keywords
:
Structural Genomics, Nysgxrc, Targer 9468A, Muconate Lactonizing Enzyme, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo
Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi.
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
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Sites
(4, 4)
Info
All Sites
1: BC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC6 (SOFTWARE)
4: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
BC2
SOFTWARE
ASP F:198 , GLU F:224 , ASP F:249 , HOH F:1061 , HOH F:1062
BINDING SITE FOR RESIDUE MG F 386
2
BC3
SOFTWARE
ARG F:239 , THR F:242 , HOH F:396 , HOH F:404 , HOH F:428 , HOH F:664
BINDING SITE FOR RESIDUE NA F 387
3
BC6
SOFTWARE
ASP H:198 , GLU H:224 , ASP H:249 , HOH H:1081 , HOH H:1082 , HOH H:1083 , HOH H:1085
BINDING SITE FOR RESIDUE MG H 386
4
BC7
SOFTWARE
ARG H:239 , THR H:242 , HOH H:392 , HOH H:396 , HOH H:643 , HOH H:736
BINDING SITE FOR RESIDUE NA H 387
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3i6ea1 (A:6-132)
1b: SCOP_d3i6eb1 (B:6-132)
1c: SCOP_d3i6ec1 (C:6-132)
1d: SCOP_d3i6ed1 (D:6-132)
1e: SCOP_d3i6ee1 (E:6-132)
1f: SCOP_d3i6ef1 (F:6-132)
1g: SCOP_d3i6eg1 (G:6-132)
1h: SCOP_d3i6eh1 (H:6-132)
2a: SCOP_d3i6ea2 (A:133-375)
2b: SCOP_d3i6eb2 (B:133-375)
2c: SCOP_d3i6ec2 (C:133-375)
2d: SCOP_d3i6ed2 (D:133-375)
2e: SCOP_d3i6ee2 (E:133-375)
2f: SCOP_d3i6ef2 (F:133-375)
2g: SCOP_d3i6eg2 (G:133-375)
2h: SCOP_d3i6eh2 (H:133-375)
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Protein Domains
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Ruegeria pomeroyi [TaxId: 89184]
(1)
1a
d3i6ea1
A:6-132
1b
d3i6eb1
B:6-132
1c
d3i6ec1
C:6-132
1d
d3i6ed1
D:6-132
1e
d3i6ee1
E:6-132
1f
d3i6ef1
F:6-132
1g
d3i6eg1
G:6-132
1h
d3i6eh1
H:6-132
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Ruegeria pomeroyi [TaxId: 89184]
(1)
2a
d3i6ea2
A:133-375
2b
d3i6eb2
B:133-375
2c
d3i6ec2
C:133-375
2d
d3i6ed2
D:133-375
2e
d3i6ee2
E:133-375
2f
d3i6ef2
F:133-375
2g
d3i6eg2
G:133-375
2h
d3i6eh2
H:133-375
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (465 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (119 KB)
Header - Biol.Unit 2
Biol.Unit 3 (121 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
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