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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSKETOLASE FROM BACILLUS ANTHRACIS
 
Authors :  N. Maltseva, Y. Kim, K. Kwon, A. Joachimiak, W. F. Anderson
Date :  22 Jun 09  (Deposition) - 30 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Beta Structure, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Maltseva, Y. Kim, K. Kwon, A. Joachimiak, W. F. Anderson
Crystal Structure Of Transketolase From Bacillus Anthracis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSKETOLASE
    Chains: A, B
    EC Number: 2.2.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BAA_3769, TKT-2, TKT2
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 261594
    Strain: AMES ANCESTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 63)

Asymmetric/Biological Unit (7, 63)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FMT11Ligand/IonFORMIC ACID
3GOL2Ligand/IonGLYCEROL
4MG2Ligand/IonMAGNESIUM ION
5MSE42Mod. Amino AcidSELENOMETHIONINE
6PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
7SO41Ligand/IonSULFATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:484 , ALA A:485 , PRO A:487 , ASP A:590 , FMT A:669 , HOH A:865 , HOH A:877 , ASP B:636BINDING SITE FOR RESIDUE GOL A 667
02AC2SOFTWAREGLN A:176 , GLU A:237 , TYR A:401BINDING SITE FOR RESIDUE GOL A 668
03AC3SOFTWARELEU A:483 , ARG A:484 , MSE A:486 , VAL A:489 , GOL A:667 , HOH A:811 , HOH A:871BINDING SITE FOR RESIDUE FMT A 669
04AC4SOFTWARETYR A:105 , PRO A:455 , FMT A:671 , HOH A:873 , HOH A:891BINDING SITE FOR RESIDUE FMT A 670
05AC5SOFTWAREMSE A:452 , GLN A:453 , THR A:511 , FMT A:670 , HOH A:947BINDING SITE FOR RESIDUE FMT A 671
06AC6SOFTWARETHR A:619 , PHE A:620 , HOH A:763 , HOH A:936 , FMT B:667 , HOH B:712BINDING SITE FOR RESIDUE FMT A 672
07AC7SOFTWAREGLN A:94 , SER A:97 , PRO A:100 , HOH A:874 , HOH A:902 , SER B:641BINDING SITE FOR RESIDUE FMT A 673
08AC8SOFTWAREGLU A:22 , LYS A:23 , HOH A:973BINDING SITE FOR RESIDUE PEG A 674
09AC9SOFTWAREASP A:157 , ASN A:187 , ILE A:189 , CL A:676 , HOH A:866 , HOH A:867BINDING SITE FOR RESIDUE MG A 675
10BC1SOFTWAREASP A:157 , GLY A:158 , ILE A:189 , MG A:675BINDING SITE FOR RESIDUE CL A 676
11BC2SOFTWAREASP A:205 , LYS A:208 , ALA A:209 , PEG A:678 , HOH A:988 , SER B:202 , ASP B:205BINDING SITE FOR RESIDUE PEG A 677
12BC3SOFTWARELYS A:208 , ALA A:209 , GLY A:211 , TRP A:212 , ARG A:239 , PEG A:677 , SER B:200BINDING SITE FOR RESIDUE PEG A 678
13BC4SOFTWAREASP A:636 , FMT A:672 , ARG B:484 , HOH B:712 , HOH B:804 , HOH B:916 , HOH B:919BINDING SITE FOR RESIDUE FMT B 667
14BC5SOFTWAREGLY B:156 , ASP B:157 , GLY B:158 , ILE B:189 , SER B:190 , MG B:670 , HOH B:799 , HOH B:800BINDING SITE FOR RESIDUE FMT B 668
15BC6SOFTWARETYR B:105 , GLN B:453 , LEU B:454 , PRO B:455 , THR B:511BINDING SITE FOR RESIDUE PEG B 669
16BC7SOFTWAREASP B:157 , ASN B:187 , ILE B:189 , FMT B:668 , HOH B:798 , HOH B:799BINDING SITE FOR RESIDUE MG B 670
17BC8SOFTWAREGLN B:176 , GLU B:237 , LYS B:238 , ARG B:398 , TYR B:401BINDING SITE FOR RESIDUE SO4 B 671
18BC9SOFTWAREASP A:554 , GLY A:578 , GLU B:204BINDING SITE FOR RESIDUE FMT B 672
19CC1SOFTWAREGLU B:340 , GLY B:341 , GLU B:343 , HOH B:891BINDING SITE FOR RESIDUE FMT B 673
20CC2SOFTWARETHR B:357 , ASP B:463 , ARG B:493 , PRO B:494 , VAL B:518 , THR B:520 , GLY B:561 , SER B:562BINDING SITE FOR RESIDUE FMT B 674
21CC3SOFTWAREARG B:216 , GLU B:244BINDING SITE FOR RESIDUE FMT B 675

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HYL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HYL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HYL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HYL)

(-) Exons   (0, 0)

(no "Exon" information available for 3HYL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:663
 aligned with Q81Y15_BACAN | Q81Y15 from UniProtKB/TrEMBL  Length:666

    Alignment length:663
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663   
         Q81Y15_BACAN     4 SIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGASAPGEKIMEEYGFTVENVVRKVKEML 666
               SCOP domains d3hyla1 A:4-337 automated matches                                                                                                                                                                                                                                                                                                             d3hyla2 A:338-527 automated matches                                                                                                                                                           d3hyla3 A:528-666 automated matches                                                                                                         SCOP domains
               CATH domains 3hylA01 A:4-330  [code=3.40.50.970, no name defined]                                                                                                                                                                                                                                                                                   3hylA02 A:331-539  [code=3.40.50.970, no name defined]                                                                                                                                                           3hylA03 A:540-666  [code=3.40.50.920, no name defined]                                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..............eeee.hhhhhhhhhhhhhhhh...hhhhhh............................hhhhhhhhhhhhhhhhhhhhhh..........eeeeehhhhhhhhhhhhhhhhhhhh....eeeeeee.......hhhhh...hhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeee............hhhhh....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.......eeehhhhhhhhhhhhhhhh..eeeee..hhhhhh.................eee...hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh..hhhhhhhh....eee...hhhhhhhhhhhhhhh....eeee....eee.hhhhhhhhhhhhhh..eeee........eeeee..hhhhhhhhhhhhhhhh...eeeee..hhhhhhh.hhhhhhhhh......eeee.......hhhhhh...eee.........hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyl A   4 SIEQLSINTIRTLSIDAIEKANSGHPGmPmGAAPmAYTLWTQFmKHNPNNPTWFNRDRFVLSAGHGSmLLYSLLHLSGYDVTmDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGmAmAERHLAAKYNRDAYNIVDHYTYAICGDGDLmEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTmLGEYAQAYPELANELQAAmNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYmNNEKDFTRDDYSGKNIWYGVREFAmGAAmNGIALHGGLKTYGGTFFVFSDYLRPAIRLAALmQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAmPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSmPSmDRFEAQTAEYKESVLPKAVTKRFAIEmGATFGWHRYVGLEGDVLGIDTFGASAPGEKImEEYGFTVENVVRKVKEmL 666
                                    13        23       |33    |   43   |    53        63       |73        83  |     93       103       113       123    | |133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313 |     323       333|      343       353       363       373       383      |393       403       413 |   | 423       433       443       453       463       473       483  |    493       503       513       523       533       543       553       563       573       583  |  | 593       603       613  |    623       633       643    |  653       663 | 
                                                      31-MSE  |       47-MSE                  71-MSE         86-MSE                                   128-MSE                          161-MSE                                                                                                                                                   315-MSE            334-MSE                                                 390-MSE                  415-MSE                              452-MSE                           486-MSE                                                                                             586-MSE                       616-MSE                         648-MSE          665-MSE
                                                        33-MSE|                                                                                         130-MSE                                                                                                                                                                                                                                                                                          419-MSE                                                                                                                                                                   589-MSE                                                                         
                                                             38-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:663
 aligned with Q81Y15_BACAN | Q81Y15 from UniProtKB/TrEMBL  Length:666

    Alignment length:663
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663   
         Q81Y15_BACAN     4 SIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYVGLEGDVLGIDTFGASAPGEKIMEEYGFTVENVVRKVKEML 666
               SCOP domains d3hylb1 B:4-337 automated matches                                                                                                                                                                                                                                                                                                             d3hylb2 B:338-527 automated matches                                                                                                                                                           d3hylb3 B:528-666 automated matches                                                                                                         SCOP domains
               CATH domains 3hylB01 B:4-330  [code=3.40.50.970, no name defined]                                                                                                                                                                                                                                                                                   3hylB02 B:331-539  [code=3.40.50.970, no name defined]                                                                                                                                                           3hylB03 B:540-666  [code=3.40.50.920, no name defined]                                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..............eeee.hhhhhhhhhhhhhhh....hhhhhh............................hhhhhhhhhhhhhhhhhhhhhh..........eeeeehhhhhhhhhhhhhhhhhhhh....eeeeeee.......hhhhh...hhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh....eeeeee............hhhhh....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.......eeehhhhhhhhhhhhhhhh..eeeee..hhhhhh.................eee...hhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh..hhhhhhhh....eee...hhhhhhhhhhhhhhh....eeee....eee.hhhhh.hhhhhhhh..eeee........eeeee...hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhh......eeee.......hhhhhh...eee.........hhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hyl B   4 SIEQLSINTIRTLSIDAIEKANSGHPGmPmGAAPmAYTLWTQFmKHNPNNPTWFNRDRFVLSAGHGSmLLYSLLHLSGYDVTmDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGmAmAERHLAAKYNRDAYNIVDHYTYAICGDGDLmEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTmLGEYAQAYPELANELQAAmNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYmNNEKDFTRDDYSGKNIWYGVREFAmGAAmNGIALHGGLKTYGGTFFVFSDYLRPAIRLAALmQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAmPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSmPSmDRFEAQTAEYKESVLPKAVTKRFAIEmGATFGWHRYVGLEGDVLGIDTFGASAPGEKImEEYGFTVENVVRKVKEmL 666
                                    13        23       |33    |   43   |    53        63       |73        83  |     93       103       113       123    | |133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313 |     323       333|      343       353       363       373       383      |393       403       413 |   | 423       433       443       453       463       473       483  |    493       503       513       523       533       543       553       563       573       583  |  | 593       603       613  |    623       633       643    |  653       663 | 
                                                      31-MSE  |       47-MSE                  71-MSE         86-MSE                                   128-MSE                          161-MSE                                                                                                                                                   315-MSE            334-MSE                                                 390-MSE                  415-MSE                              452-MSE                           486-MSE                                                                                             586-MSE                       616-MSE                         648-MSE          665-MSE
                                                        33-MSE|                                                                                         130-MSE                                                                                                                                                                                                                                                                                          419-MSE                                                                                                                                                                   589-MSE                                                                         
                                                             38-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HYL)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q81Y15_BACAN | Q81Y15)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004802    transketolase activity    Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3hyl
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81Y15_BACAN | Q81Y15: 3m49

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3HYL)