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3HYL
Asym. Unit
Info
Asym.Unit (456 KB)
Biol.Unit 1 (446 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSKETOLASE FROM BACILLUS ANTHRACIS
Authors
:
N. Maltseva, Y. Kim, K. Kwon, A. Joachimiak, W. F. Anderson
Date
:
22 Jun 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta Structure, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Maltseva, Y. Kim, K. Kwon, A. Joachimiak, W. F. Anderson
Crystal Structure Of Transketolase From Bacillus Anthracis
To Be Published
[
close entry info
]
Hetero Components
(7, 63)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
7a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FMT
11
Ligand/Ion
FORMIC ACID
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
MSE
42
Mod. Amino Acid
SELENOMETHIONINE
6
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:484 , ALA A:485 , PRO A:487 , ASP A:590 , FMT A:669 , HOH A:865 , HOH A:877 , ASP B:636
BINDING SITE FOR RESIDUE GOL A 667
02
AC2
SOFTWARE
GLN A:176 , GLU A:237 , TYR A:401
BINDING SITE FOR RESIDUE GOL A 668
03
AC3
SOFTWARE
LEU A:483 , ARG A:484 , MSE A:486 , VAL A:489 , GOL A:667 , HOH A:811 , HOH A:871
BINDING SITE FOR RESIDUE FMT A 669
04
AC4
SOFTWARE
TYR A:105 , PRO A:455 , FMT A:671 , HOH A:873 , HOH A:891
BINDING SITE FOR RESIDUE FMT A 670
05
AC5
SOFTWARE
MSE A:452 , GLN A:453 , THR A:511 , FMT A:670 , HOH A:947
BINDING SITE FOR RESIDUE FMT A 671
06
AC6
SOFTWARE
THR A:619 , PHE A:620 , HOH A:763 , HOH A:936 , FMT B:667 , HOH B:712
BINDING SITE FOR RESIDUE FMT A 672
07
AC7
SOFTWARE
GLN A:94 , SER A:97 , PRO A:100 , HOH A:874 , HOH A:902 , SER B:641
BINDING SITE FOR RESIDUE FMT A 673
08
AC8
SOFTWARE
GLU A:22 , LYS A:23 , HOH A:973
BINDING SITE FOR RESIDUE PEG A 674
09
AC9
SOFTWARE
ASP A:157 , ASN A:187 , ILE A:189 , CL A:676 , HOH A:866 , HOH A:867
BINDING SITE FOR RESIDUE MG A 675
10
BC1
SOFTWARE
ASP A:157 , GLY A:158 , ILE A:189 , MG A:675
BINDING SITE FOR RESIDUE CL A 676
11
BC2
SOFTWARE
ASP A:205 , LYS A:208 , ALA A:209 , PEG A:678 , HOH A:988 , SER B:202 , ASP B:205
BINDING SITE FOR RESIDUE PEG A 677
12
BC3
SOFTWARE
LYS A:208 , ALA A:209 , GLY A:211 , TRP A:212 , ARG A:239 , PEG A:677 , SER B:200
BINDING SITE FOR RESIDUE PEG A 678
13
BC4
SOFTWARE
ASP A:636 , FMT A:672 , ARG B:484 , HOH B:712 , HOH B:804 , HOH B:916 , HOH B:919
BINDING SITE FOR RESIDUE FMT B 667
14
BC5
SOFTWARE
GLY B:156 , ASP B:157 , GLY B:158 , ILE B:189 , SER B:190 , MG B:670 , HOH B:799 , HOH B:800
BINDING SITE FOR RESIDUE FMT B 668
15
BC6
SOFTWARE
TYR B:105 , GLN B:453 , LEU B:454 , PRO B:455 , THR B:511
BINDING SITE FOR RESIDUE PEG B 669
16
BC7
SOFTWARE
ASP B:157 , ASN B:187 , ILE B:189 , FMT B:668 , HOH B:798 , HOH B:799
BINDING SITE FOR RESIDUE MG B 670
17
BC8
SOFTWARE
GLN B:176 , GLU B:237 , LYS B:238 , ARG B:398 , TYR B:401
BINDING SITE FOR RESIDUE SO4 B 671
18
BC9
SOFTWARE
ASP A:554 , GLY A:578 , GLU B:204
BINDING SITE FOR RESIDUE FMT B 672
19
CC1
SOFTWARE
GLU B:340 , GLY B:341 , GLU B:343 , HOH B:891
BINDING SITE FOR RESIDUE FMT B 673
20
CC2
SOFTWARE
THR B:357 , ASP B:463 , ARG B:493 , PRO B:494 , VAL B:518 , THR B:520 , GLY B:561 , SER B:562
BINDING SITE FOR RESIDUE FMT B 674
21
CC3
SOFTWARE
ARG B:216 , GLU B:244
BINDING SITE FOR RESIDUE FMT B 675
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3hyla1 (A:4-337)
1b: SCOP_d3hyla2 (A:338-527)
1c: SCOP_d3hylb1 (B:4-337)
1d: SCOP_d3hylb2 (B:338-527)
2a: SCOP_d3hyla3 (A:528-666)
2b: SCOP_d3hylb3 (B:528-666)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Bacillus anthracis [TaxId: 261594]
(2)
1a
d3hyla1
A:4-337
1b
d3hyla2
A:338-527
1c
d3hylb1
B:4-337
1d
d3hylb2
B:338-527
Fold
:
TK C-terminal domain-like
(79)
Superfamily
:
TK C-terminal domain-like
(79)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Bacillus anthracis [TaxId: 261594]
(2)
2a
d3hyla3
A:528-666
2b
d3hylb3
B:528-666
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_3hylA03 (A:540-666)
1b: CATH_3hylB03 (B:540-666)
2a: CATH_3hylA02 (A:331-539)
2b: CATH_3hylB02 (B:331-539)
2c: CATH_3hylA01 (A:4-330)
2d: CATH_3hylB01 (B:4-330)
View:
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Classes
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(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.920, no name defined]
(73)
Bacillus anthracis. Organism_taxid: 261594. Strain: ames ancestor.
(2)
1a
3hylA03
A:540-666
1b
3hylB03
B:540-666
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Bacillus anthracis. Organism_taxid: 261594. Strain: ames ancestor.
(2)
2a
3hylA02
A:331-539
2b
3hylB02
B:331-539
2c
3hylA01
A:4-330
2d
3hylB01
B:4-330
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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all
)
Protein
Nucleic
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Hetero
Ligand
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asym.Unit (456 KB)
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