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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR, A MEMBER OF PADR FAMILY, FROM ENTEROCOCCUS FAECALIS V583
 
Authors :  B. Nocek, M. Zhou, S. Moy, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)
Date :  15 May 09  (Deposition) - 02 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcriptional Regulator, Padr Family, Pf03551, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, M. Zhou, S. Moy, A. Joachimiak
Crystal Structure Of Transcriptional Regulator, A Membar Of Padr Family, From Enterococcus Faecalis V583
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PADR FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PMCSG7
    Gene: EF_1297
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 1351
    Strain: V583

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:58 , GLU A:84 , LYS B:2BINDING SITE FOR RESIDUE GOL A 1001
2AC2SOFTWARELYS A:55 , ARG A:76 , HOH A:119 , LYS B:63BINDING SITE FOR RESIDUE SO4 A 114
3AC3SOFTWARETYR B:25 , ARG B:72 , LYS B:73BINDING SITE FOR RESIDUE SO4 B 114

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HHH)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:36 -Gly A:37
2Gly A:37 -Phe A:38
3Gln B:36 -Gly B:37
4Glu B:67 -Lys B:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HHH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HHH)

(-) Exons   (0, 0)

(no "Exon" information available for 3HHH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with Q835S6_ENTFA | Q835S6 from UniProtKB/TrEMBL  Length:113

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q835S6_ENTFA     2 KQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKN 105
               SCOP domains d3hhha_ A: automated matches                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeeee..--.eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 3hhh A   2 KQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSE--PmRKFYRLTSSGEAELADFWQRWTLLSKQVNKmKKN 105
                                    11        21        31        41        51        61     |  71        81        91       101|   
                                                                                            67 70|                            102-MSE
                                                                                                71-MSE                              


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Q835S6_ENTFA | Q835S6 from UniProtKB/TrEMBL  Length:113

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         Q835S6_ENTFA     2 KQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKK 104
               SCOP domains d3hhhb_ B: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3hhh B   2 KQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPmRKFYRLTSSGEAELADFWQRWTLLSKQVNKmKK 104
                                    11        21        31        41        51        61        71        81        91       101|  
                                                                                                71-MSE                        102-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HHH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HHH)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HHH)

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