3GMH - JenaLib

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:193
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:193
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199   
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIP 202
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee.............hhhhhhhhhhhhhhhhhhh..........eeeeeeeee....................eeeeeeeeee...eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: A:14-197 UniProt: 14-197                                                                                                                                                    ----- PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: A:74-114 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: A:149-202 UniProt: 149-205             Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: A:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: A:114-149           ----------------------------------------------------- Transcript 1 (2)
                 3gmh A  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIP 202
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain B from PDB  Type:PROTEIN  Length:185
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198     
          MD2L1_HUMAN     9 QGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HORMA  PDB: B:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a        ------------------------------------------------Exon 1.3  PDB: B:74-109 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: B:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.2a  PDB: B:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: B:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh B   9 GSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKT----------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    18        28        38        48        58        68        78        88        98       108|        - |     128       138       148       158       168       178       188       198     
                                                                                                                              109        120

Chain C from PDB  Type:PROTEIN  Length:195
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVN 204
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee.............hhhhhhhhhhhhhhhhhhh..........eeeeeeeee....................eeeeeeeeee...eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: C:14-197 UniProt: 14-197                                                                                                                                                    ------- PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: C:74-114 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: C:149-204 UniProt: 149-205 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: C:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: C:114-149           ------------------------------------------------------- Transcript 1 (2)
                 3gmh C  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVN 204
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain D from PDB  Type:PROTEIN  Length:187
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:197
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       
          MD2L1_HUMAN     7 REQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee....eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------HORMA  PDB: D:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a          ------------------------------------------------Exon 1.3  PDB: D:74-109 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: D:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.2a  PDB: D:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: D:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh D   7 HHGSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKT----------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    16        26        36        46        56        66        76        86        96       106  |      -   |   126       136       146       156       166       176       186       196       
                                                                                                                                109        120

Chain E from PDB  Type:PROTEIN  Length:188
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVN 204
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee....-------..hhhhhhhhhhhhhhhhhhh..........eeeeeeeee....................eeeeeeeeee...eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: E:14-197 UniProt: 14-197                                                                                                                                                    ------- PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: E:74-110 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: E:149-204 UniProt: 149-205 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: E:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: E:118-149           ------------------------------------------------------- Transcript 1 (2)
                 3gmh E  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTA-------EKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVN 204
                                    19        29        39        49        59        69        79        89        99       109|      119       129       139       149       159       169       179       189       199     
                                                                                                                              110     118

Chain F from PDB  Type:PROTEIN  Length:185
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198     
          MD2L1_HUMAN     9 QGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HORMA  PDB: F:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a        ------------------------------------------------Exon 1.3  PDB: F:74-109 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: F:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.2a  PDB: F:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: F:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh F   9 GSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKT----------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    18        28        38        48        58        68        78        88        98       108|        - |     128       138       148       158       168       178       188       198     
                                                                                                                              109        120

Chain G from PDB  Type:PROTEIN  Length:187
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:193
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199   
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIP 202
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee....------...hhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeee....................eeeeeeeeee...eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: G:14-197 UniProt: 14-197                                                                                                                                                    ----- PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: G:74-110 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: G:149-202 UniProt: 149-205             Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: G:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: G:117-149           ----------------------------------------------------- Transcript 1 (2)
                 3gmh G  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTA------REKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIP 202
                                    19        29        39        49        59        69        79        89        99       109|      119       129       139       149       159       169       179       189       199   
                                                                                                                              110    117

Chain H from PDB  Type:PROTEIN  Length:186
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:196
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197      
          MD2L1_HUMAN     8 EQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee....eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------HORMA  PDB: H:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a         ------------------------------------------------Exon 1.3  PDB: H:74-109 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: H:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2a  PDB: H:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: H:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh H   8 HGSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKT----------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    17        27        37        47        57        67        77        87        97       107 |       -  |    127       137       147       157       167       177       187       197      
                                                                                                                               109        120

Chain I from PDB  Type:PROTEIN  Length:188
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:194
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199    
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee....------...hhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee....................eeeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: I:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: I:74-110 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: I:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: I:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: I:117-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh I  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTA------REKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    19        29        39        49        59        69        79        89        99       109|      119       129       139       149       159       169       179       189       199    
                                                                                                                              110    117

Chain J from PDB  Type:PROTEIN  Length:185
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198     
          MD2L1_HUMAN     9 QGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee...----------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee....ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HORMA  PDB: J:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a        ------------------------------------------------Exon 1.3  PDB: J:74-109 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: J:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.2a  PDB: J:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: J:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh J   9 GSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKT----------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    18        28        38        48        58        68        78        88        98       108|        - |     128       138       148       158       168       178       188       198     
                                                                                                                              109        120

Chain K from PDB  Type:PROTEIN  Length:188
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:194
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199    
          MD2L1_HUMAN    10 GITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeeeeeeeee....------...hhhhhhhhhhhhhhhhhhh..........eeeeeeeee....................eeeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----HORMA  PDB: K:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a       ------------------------------------------------Exon 1.3  PDB: K:74-110 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: K:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.2a  PDB: K:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: K:117-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh K  10 SITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTA------REKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    19        29        39        49        59        69        79        89        99       109|      119       129       139       149       159       169       179       189       199    
                                                                                                                              110    117

Chain L from PDB  Type:PROTEIN  Length:187
 aligned with MD2L1_HUMAN | Q13257 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:195
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198     
          MD2L1_HUMAN     9 QGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhhh.......eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeee.....--------hhhhhhhhhhhhhhhhhhhhh........eeeeeeeee......hhhhh....eee.......eeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HORMA  PDB: L:14-197 UniProt: 14-197                                                                                                                                                    ------ PROSITE
           Transcript 1 (1) Exon 1.1a        ------------------------------------------------Exon 1.3  PDB: L:74-111 UniProt: 74-114  ----------------------------------Exon 1.5c  PDB: L:149-203 UniProt: 149-205 [INCOMPLETE] Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.2a  PDB: L:25-74 UniProt: 25-74            ---------------------------------------Exon 1.4b  PDB: L:120-149           ------------------------------------------------------ Transcript 1 (2)
                 3gmh L   9 GSITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAK--------SQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPV 203
                                    18        28        38        48        58        68        78        88        98       108  |      - |     128       138       148       158       168       178       188       198     
                                                                                                                                111      120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (MD2L1_HUMAN | Q13257)

molecular function
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0031145	anaphase-promoting complex-dependent catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0007093	mitotic cell cycle checkpoint	A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage.
	GO:0000070	mitotic sister chromatid segregation	The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
	GO:0007094	mitotic spindle assembly checkpoint	A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0045930	negative regulation of mitotic cell cycle	Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle.
	GO:0042177	negative regulation of protein catabolic process	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
	GO:1904667	negative regulation of ubiquitin protein ligase activity	Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity.
	GO:0051436	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin ligase activity that contributes to the mitotic cell cycle.
	GO:0090267	positive regulation of mitotic cell cycle spindle assembly checkpoint	Any process that increases the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.
	GO:0051437	positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition	Any process that activates, maintains or increases the rate of ubiquitin ligase activity that contributes to the regulation of the mitotic cell cycle phase transition.
	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
	GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein.
	GO:0007062	sister chromatid cohesion	The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0000775	chromosome, centromeric region	The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
	GO:0000777	condensed chromosome kinetochore	A multisubunit complex that is located at the centromeric region of a condensed chromosome and provides an attachment point for the spindle microtubules.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0000776	kinetochore	A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
	GO:0072686	mitotic spindle	A spindle that forms as part of mitosis. Mitotic and meiotic spindles contain distinctive complements of proteins associated with microtubules.
	GO:0005643	nuclear pore	Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.
	GO:0000922	spindle pole	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 12)

Exons (5, 60)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (31, 31)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File