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3GMH
Asym. Unit
Info
Asym.Unit (806 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (139 KB)
Biol.Unit 3 (137 KB)
Biol.Unit 4 (136 KB)
Biol.Unit 5 (136 KB)
Biol.Unit 6 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MAD2 DIMER
Authors
:
E. Ozkan, X. Luo, M. Machius, H. Yu, J. Deisenhofer
Date
:
13 Mar 09 (Deposition) - 17 Nov 10 (Release) - 07 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Cell Cycle, Mitotic Spindle Assembly Checkpoint, Cell Division, Mitosis, Nucleus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hara, E. Ozkan, H. Sun, H. Yu, X. Luo
Structure Of An Intermediate Conformer Of The Spindle Checkpoint Protein Mad2.
Proc. Natl. Acad. Sci. Usa V. 112 11252 2015
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:33 , ARG A:45 , ARG B:45 , TYR H:49 , GLY H:50
BINDING SITE FOR RESIDUE SO4 H 206
02
AC2
SOFTWARE
TYR C:33 , LYS L:48 , TYR L:49 , GLY L:50
BINDING SITE FOR RESIDUE SO4 L 206
03
AC3
SOFTWARE
LYS D:48 , TYR D:49 , GLY D:50 , TYR K:33 , ARG K:45 , ARG L:45
BINDING SITE FOR RESIDUE SO4 D 206
04
AC4
SOFTWARE
LYS B:48 , TYR B:49 , GLY B:50 , TYR G:33 , ARG G:45 , ARG H:45
BINDING SITE FOR RESIDUE SO4 B 206
05
AC5
SOFTWARE
ARG A:182 , SER A:185 , LYS A:192
BINDING SITE FOR RESIDUE SO4 A 206
06
AC6
SOFTWARE
ARG C:129 , ARG C:133 , ARG D:182
BINDING SITE FOR RESIDUE SO4 C 206
07
AC7
SOFTWARE
ARG C:182 , SER C:185 , LYS C:192
BINDING SITE FOR RESIDUE SO4 C 207
08
AC8
SOFTWARE
ARG A:129 , ARG A:133 , GLY B:36 , ARG B:182
BINDING SITE FOR RESIDUE SO4 A 207
09
AC9
SOFTWARE
ARG I:129 , ARG I:133 , GLY J:36 , ARG J:182
BINDING SITE FOR RESIDUE SO4 I 206
10
BC1
SOFTWARE
ARG E:129 , ARG E:133 , GLY F:36 , ARG F:182
BINDING SITE FOR RESIDUE SO4 E 206
11
BC2
SOFTWARE
ARG K:129 , ARG K:133 , GLY L:36 , LEU L:145 , ARG L:182
BINDING SITE FOR RESIDUE SO4 K 206
12
BC3
SOFTWARE
ARG G:129 , ARG G:133 , GLY H:36 , ARG H:182
BINDING SITE FOR RESIDUE SO4 G 206
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: HORMA (A:14-197,B:14-197,C:14-197,D:14-19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HORMA
PS50815
HORMA domain profile.
MD2L1_HUMAN
14-197
12
A:14-197
B:14-197
C:14-197
D:14-197
E:14-197
F:14-197
G:14-197
H:14-197
I:14-197
J:14-197
K:14-197
L:14-197
[
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Exons
(5, 60)
Info
All Exons
Exon 1.1a (A:10-25 | B:9-25 | C:10-25 | D:7-2...)
Exon 1.2a (A:25-74 | B:25-74 | C:25-74 | D:25...)
Exon 1.3 (A:74-114 | B:74-109 | C:74-114 | D...)
Exon 1.4b (A:114-149 | B:120-149 | C:114-149 ...)
Exon 1.5c (A:149-202 | B:149-203 | C:149-204 ...)
View:
Select:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
6: Boundary 1.5c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000296509
1a
ENSE00001705676
chr4:
120988229-120987817
413
MD2L1_HUMAN
1-25
25
12
A:10-25
B:9-25
C:10-25
D:7-25
E:10-25
F:9-25
G:10-25
H:8-25
I:10-25
J:9-25
K:10-25
L:9-25
16
17
16
19
16
17
16
18
16
17
16
17
1.2a
ENST00000296509
2a
ENSE00001081494
chr4:
120986973-120986827
147
MD2L1_HUMAN
25-74
50
12
A:25-74
B:25-74
C:25-74
D:25-74
E:25-74
F:25-74
G:25-74
H:25-74
I:25-74
J:25-74
K:25-74
L:25-74
50
50
50
50
50
50
50
50
50
50
50
50
1.3
ENST00000296509
3
ENSE00001081493
chr4:
120983250-120983130
121
MD2L1_HUMAN
74-114
41
12
A:74-114
B:74-109
C:74-114
D:74-109
E:74-110
F:74-109
G:74-110
H:74-109
I:74-110
J:74-109
K:74-110
L:74-111
41
36
41
36
37
36
37
36
37
36
37
38
1.4b
ENST00000296509
4b
ENSE00001765948
chr4:
120982132-120982029
104
MD2L1_HUMAN
114-149
36
12
A:114-149
B:120-149
C:114-149
D:120-149
E:118-149
F:120-149
G:117-149
H:120-149
I:117-149
J:120-149
K:117-149
L:120-149
36
30
36
30
32
30
33
30
33
30
33
30
1.5c
ENST00000296509
5c
ENSE00001796865
chr4:
120981445-120980577
869
MD2L1_HUMAN
149-205
57
12
A:149-202
B:149-203
C:149-204
D:149-203
E:149-204
F:149-203
G:149-202
H:149-203
I:149-203
J:149-203
K:149-203
L:149-203
54
55
56
55
56
55
54
55
55
55
55
55
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (806 KB)
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