3GIL - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-T(ANTI) PAIR

Authors :   O. Rechkoblit, L. Malinina, D. J. Patel

Date :   05 Mar 09 (Deposition) - 19 May 09 (Release) - 07 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.71

Chains :   Asym. Unit : A,B,D,E,H,J
Biol. Unit 1: A,D,E  (1x)
Biol. Unit 2: B,H,J  (1x)

Keywords :   Dna Polymerase, 8-Oxoguanine, Y-Family, Lesion Bypass, Dna Damage, Dna Repair, Dna Replication, Dna-Binding, Dna-Directed Dna Polymerase, Magnesium, Metal-Binding, Mutator Protein, Nucleotidyltransferase, Transferase, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Rechkoblit, L. Malinina, Y. Cheng, N. E. Geacintov, S. Broyde, D. J. Patel
Impact Of Conformational Heterogeneity Of Oxog Lesions And Their Pairing Partners On Bypass Fidelity By Y Family Polymerases.
Structure V. 17 725 2009
PubMed-ID: 19446528 | Reference-DOI: 10.1016/J.STR.2009.03.011

Molecule 1 - DNA POLYMERASE IV
	Atcc	:	35092
	Chains	:	A, B
	EC Number	:	2.7.7.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)-RIL(STRATAGENE)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DBH, DPO4, SSO2448
	Organism Scientific	:	SULFOLOBUS SOLFATARICUS P2
	Organism Taxid	:	273057
	Strain	:	P2 / DSM 1617 / JCM 11322
	Synonym	:	POL IV

*Molecule 2 - 5'-D(GPTPTPGPGPAPTPGPGPTPAPGP(2DT))-3'**
	Chains	:	D, H
	Engineered	:	YES
	Other Details	:	PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END)
	Other Details - Source	:	DNA PRIMER STRAND
	Synthetic	:	YES

*Molecule 3 - 5'-D(CPTPAPAPCP(8OG) PCPTPAPCPCPAPTPCPCPAPAPC)-3'*
	Chains	:	E, J
	Engineered	:	YES
	Other Details	:	OXOG-MODIFIED TEMPLATE STRAND
	Other Details - Source	:	DNA OXOG-MODIFIED TEMPLATE STRAND
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	D	E	H	J
Biological Unit 1 (1x)	:	A		D	E
Biological Unit 2 (1x)	:		B			H	J

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 12)

No.	Name	Count	Type	Full Name
1	2DT	2	Mod. Nucleotide	3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2	8OG	2	Mod. Nucleotide	8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
3	CA	6	Ligand/Ion	CALCIUM ION
4	DGT	2	Ligand/Ion	2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	2DT	1	Mod. Nucleotide	3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2	8OG	1	Mod. Nucleotide	8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	DGT	1	Ligand/Ion	2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	2DT	1	Mod. Nucleotide	3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2	8OG	1	Mod. Nucleotide	8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	DGT	1	Ligand/Ion	2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:7 , PHE A:8 , TYR A:10 , PHE A:11 , TYR A:12 , ALA A:44 , THR A:45 , TYR A:48 , ARG A:51 , ALA A:57 , ASP A:105 , LYS A:159 , CA A:415 , CA A:416 , HOH A:518 , HOH A:570 , HOH A:595 , HOH A:615 , 2DT D:814 , DC E:905 , 8OG E:906	BINDING SITE FOR RESIDUE DGT A 414
2	AC2	SOFTWARE	ASP A:7 , ASP A:105 , GLU A:106 , DGT A:414 , CA A:416 , HOH A:614 , HOH A:615	BINDING SITE FOR RESIDUE CA A 415
3	AC3	SOFTWARE	ASP A:7 , PHE A:8 , ASP A:105 , DGT A:414 , CA A:415	BINDING SITE FOR RESIDUE CA A 416
4	AC4	SOFTWARE	ALA A:181 , ILE A:186 , HOH A:616 , HOH A:619 , HOH D:617	BINDING SITE FOR RESIDUE CA A 417
5	AC5	SOFTWARE	HOH B:532 , HOH B:597 , ASP B:1007 , PHE B:1008 , ASP B:1009 , TYR B:1010 , PHE B:1011 , TYR B:1012 , ALA B:1044 , THR B:1045 , TYR B:1048 , ARG B:1051 , ALA B:1057 , ASP B:1105 , LYS B:1159 , CA B:1415 , CA B:1416 , 2DT H:1814 , DC J:1905 , 8OG J:1906	BINDING SITE FOR RESIDUE DGT B 1414
6	AC6	SOFTWARE	HOH B:621 , ASP B:1007 , ASP B:1105 , GLU B:1106 , DGT B:1414 , CA B:1416	BINDING SITE FOR RESIDUE CA B 1415
7	AC7	SOFTWARE	ASP B:1007 , PHE B:1008 , ASP B:1105 , DGT B:1414 , CA B:1415	BINDING SITE FOR RESIDUE CA B 1416
8	AC8	SOFTWARE	HOH B:626 , HOH B:627 , ALA B:1181 , VAL B:1183 , ILE B:1186 , HOH H:625 , DG H:1813	BINDING SITE FOR RESIDUE CA B 1417

(no "SS Bond" information available for 3GIL)

(no "Cis Peptide Bond" information available for 3GIL)

(no "SAP(SNP)/Variant" information available for 3GIL)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UMUC	PS50173	UmuC domain profile.	DPO4_SULSO	3-187	2	A:3-187 B:1003-1187

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UMUC	PS50173	UmuC domain profile.	DPO4_SULSO	3-187	1	A:3-187 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UMUC	PS50173	UmuC domain profile.	DPO4_SULSO	3-187	1	- B:1003-1187

(no "Exon" information available for 3GIL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:341
 aligned with DPO4_SULSO | Q97W02 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
          DPO4_SULSO      1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI  341
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhh...eeeeee.......eeeeeehhhhhh.......hhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh....eeeee..eeeee......hhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --UMUC  PDB: A:3-187 UniProt: 3-187                                                                                                                                                        ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3gil A    1 GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI  341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340

Chain B from PDB  Type:PROTEIN  Length:341
 aligned with DPO4_SULSO | Q97W02 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340 
          DPO4_SULSO      1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI  341
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhh...eeeeee.......eeeeeehhhhhh.......hhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhh..eeeee..eeeeee.....hhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --UMUC  PDB: B:1003-1187 UniProt: 3-187                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3gil B 1001 GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI 1341
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340

Chain D from PDB  Type:DNA  Length:13
                                              
                3gil D  802 GTTGGATGGTAGt  814
                                   811  |
                                      814-2DT

Chain E from PDB  Type:DNA  Length:18
                                                   
                3gil E  901 CTAACgCTACCATCCAAC  918
                                 | 910        
                                 |            
                               906-8OG

Chain H from PDB  Type:DNA  Length:13
                                              
                3gil H 1802 GTTGGATGGTAGt 1814
                                  1811  |
                                     1814-2DT

Chain J from PDB  Type:DNA  Length:16
                                                 
                3gil J 1903 AACgCTACCATCCAAC 1918
                               |  1912      
                               |            
                            1906-8OG

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GIL)

(no "CATH Domain" information available for 3GIL)

(no "Pfam Domain" information available for 3GIL)

Asymmetric Unit(hide GO term definitions)

Chain A,B (DPO4_SULSO | Q97W02)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003887	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
	GO:0003684	damaged DNA binding	Interacting selectively and non-covalently with damaged DNA.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0071897	DNA biosynthetic process	The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006261	DNA-dependent DNA replication	A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		2DT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		8OG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DGT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3gil)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3gil
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	DPO4_SULSO \| Q97W02
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.7.7.7
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	DPO4_SULSO \| Q97W02
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

2asd	OXOG-MODIFIED DPO4 INSERTION TERNARY COMPLEX
2asj	OXOG-MODIFIED DPO4 PRE-INSERTION BINARY COMPLEX
2asl	OXOG-MODIFIED DPO4 POST-INSERTION BINARY COMPLEX
3gii	DPO4 EXTENSION TERNARY COMPLEX WITH DISORDERED A OPPOSITE AN OXOG IN ANTI CONFORMATION
3gij	DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(SYN)-A(ANTI) AND OXOG(ANTI)-A(SYN) PAIRS
3gik	DPO4 EXTENSION TERNARY COMPLEX WITH THE OXOG(ANTI)-C(ANTI) PAIR
3gim	DPO4 EXTENSION TERNARY COMPLEX WITH OXOG(ANTI)-G(SYN) PAIR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File