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(-) Description

Title :  CRYSTAL STRUCTURE OF EVASIN-1
 
Authors :  J. M. Dias, J. P. Shaw
Date :  06 Jan 09  (Deposition) - 12 Jan 10  (Release) - 12 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym. Unit :  A,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  D  (1x)
Keywords :  Novel Fold, Glycoprotein, Secreted, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Dias, C. Losberger, M. Deruaz, C. A. Power, A. E. I. Proudfoot, J. P. Shaw
Structural Basis Of Chemokine Sequestration By A Tick Chemokine Binding Protein: The Crystal Structure Of The Complex Between Evasin-1 And Ccl3
Plos One V. 4 2009
PubMed-ID: 20041127  |  Reference-DOI: 10.1371/JOURNAL.PONE.0008514
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EVASIN-1
    Chains: A, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC
    Expression System Strain: TN5
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Common: BROWN DOG TICK
    Organism Scientific: RHIPICEPHALUS SANGUINEUS
    Organism Taxid: 34632

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AD
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3FPR)

(-) Sites  (0, 0)

(no "Site" information available for 3FPR)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:12 -A:33
2A:29 -A:70
3A:46 -A:75
4A:65 -A:84
5D:12 -D:33
6D:29 -D:70
7D:46 -D:75
8D:65 -D:84

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg D:87 -Asn D:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FPR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FPR)

(-) Exons   (0, 0)

(no "Exon" information available for 3FPR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with EVA1_RHISA | P0C8E7 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:85
                                    36        46        56        66        76        86        96       106     
           EVA1_RHISA    27 GDLGGCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRNWRD 111
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.....eee...eeee..eeee.....eee.hhhhhhhhh.....eeeeeeeee..eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 3fpr A   7 GDLGGCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRNWRD  91
                                    16        26        36        46        56        66        76        86     


Chain D from PDB  Type:PROTEIN  Length:78
 aligned with EVA1_RHISA | P0C8E7 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:78
                                    40        50        60        70        80        90       100        
           EVA1_RHISA    31 GCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRN 108
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee.....eee...eeee..eeee.....eee.hhhhhhhh......eeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3fpr D  11 GCPFLVAENKTGYPTIVACKQDCNGTTETAPNGTRCFSIGDEGLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRRN  88
                                    20        30        40        50        60        70        80
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FPR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FPR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FPR)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,D   (EVA1_RHISA | P0C8E7)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  Cis Peptide Bonds
    Arg D:87 - Asn D:88   [ RasMol ]  
 
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  3fpr
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  EVA1_RHISA | P0C8E7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EVA1_RHISA | P0C8E7: 3fpt 3fpu

(-) Related Entries Specified in the PDB File

3fpt UNCOMPLEXED GLYCOSYLATED EVASIN-1
3fpu COMPLEX BETWEEN EVASIN-1 AND CCL3