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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCOSYLATED K135E PEB3
 
Authors :  Tongpil Min, Allan Matte, Miroslaw Cygler
Date :  12 Dec 08  (Deposition) - 10 Mar 09  (Release) - 21 Apr 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Peb3, K135E, Citrate, Glycosylated, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Min, M. Vedadi, D. C. Watson, G. A. Wasney, C. Munger, M. Cygler, A. Matte, N. M. Young
Specificity Of Campylobacter Jejuni Adhesin Peb3 For Phosphates And Structural Differences Among Its Ligand Complexes.
Biochemistry V. 48 3057 2009
PubMed-ID: 19236052  |  Reference-DOI: 10.1021/BI802195D
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR ANTIGENIC PEPTIDE PEB3
    Chains: A, B
    Engineered: YES
    Expression System: CAMPYLOBACTER JEJUNI
    Expression System Plasmid: PUC18
    Expression System Taxid: 197
    Expression System Vector Type: PLASMID
    Gene: CJ0289C, PEB3
    Mutation: YES
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197
    Strain: 11168

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1B6D2Ligand/Ion2,4-BIS(ACETYLAMINO)-2,4,6-TRIDEOXY-BETA-D-GLUCOPYRANOSE
2FLC2Ligand/IonCITRATE ANION
3NGZ2Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-ALPHA-L-GLUCOPYRANOSE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:27 , GLY A:28 , GLY A:54 , PRO A:55 , ASN A:137 , THR A:138 , SER A:139 , PRO A:169 , ASN A:170 , SER A:171 , GLY A:172 , SER A:173 , HOH A:295 , HOH A:347 , HOH A:393 , HOH A:426BINDING SITE FOR RESIDUE FLC A 301
2AC2SOFTWAREASN A:90 , SER A:92 , NGZ A:402BINDING SITE FOR RESIDUE B6D A 401
3AC3SOFTWAREB6D A:401 , HOH A:465BINDING SITE FOR RESIDUE NGZ A 402
4AC4SOFTWAREPRO B:27 , GLY B:28 , GLY B:54 , PRO B:55 , ASN B:137 , THR B:138 , SER B:139 , ASN B:170 , SER B:171 , GLY B:172 , SER B:173 , HOH B:311 , HOH B:343 , HOH B:350 , HOH B:355BINDING SITE FOR RESIDUE FLC B 301
5AC5SOFTWAREASN B:90 , NGZ B:402BINDING SITE FOR RESIDUE B6D B 401
6AC6SOFTWAREB6D B:401BINDING SITE FOR RESIDUE NGZ B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FIR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FIR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FIR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FIR)

(-) Exons   (0, 0)

(no "Exon" information available for 3FIR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q0PBL7_CAMJE | Q0PBL7 from UniProtKB/TrEMBL  Length:250

    Alignment length:231
                                                                                                                                                                                                                                                               250 
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
         Q0PBL7_CAMJE    21 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWRE-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee.........hhhhhhhh...eee............hhhhhhhhhhhhhhhhhhhhhheeee.................eeeeehhhhhhh....eeee.......eeeeeeee....hhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fir A  21 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGESNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWREH 251
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with Q0PBL7_CAMJE | Q0PBL7 from UniProtKB/TrEMBL  Length:250

    Alignment length:231
                                                                                                                                                                                                                                                               250 
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
         Q0PBL7_CAMJE    21 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWRE-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee.........hhhhhhhh...eee............hhhhhhhhhhhhhhhhhhhhh.eeee.................eeeeehhhhhhh....eee........eeeeeeee....hhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fir B  21 DVNLYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNPLKIKGLKDLANKKVRIVVPEGAGESNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKKYGWREH 251
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FIR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FIR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FIR)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q0PBL7_CAMJE | Q0PBL7)
molecular function
    GO:0015419    ATPase-coupled sulfate transmembrane transporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + sulfate(out) = ADP + phosphate + sulfate(in).
biological process
    GO:1902358    sulfate transmembrane transport    The directed movement of sulfate across a membrane.
    GO:0008272    sulfate transport    The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0PBL7_CAMJE | Q0PBL7: 2hxw 3fj7 3fjg 3fjm

(-) Related Entries Specified in the PDB File

2hxw PEB3 STRUCTURE WITH CITRATE IN LIGAND BINDING SITE
3fjg
3fjt