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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  ROCCOR DOMAIN TANDEM OF RAB FAMILY PROTEIN (ROCO)
 
Authors :  K. Gotthardt, M. Weyand, A. Kortholt, P. J. M. Van Haastert, A. Witting
Date :  09 Jul 08  (Deposition) - 12 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Roccor, G-Domain, Cor, Gtp-Binding, Nucleotide-Binding, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Gotthardt, M. Weyand, A. Kortholt, P. J. Van Haastert, A. Wittinghofer
Structure Of The Roc-Cor Domain Tandem Of C. Tepidum, A Prokaryotic Homologue Of The Human Lrrk2 Parkinson Kinase
Embo J. V. 27 2239 2008
PubMed-ID: 18650931  |  Reference-DOI: 10.1038/EMBOJ.2008.150

(-) Compounds

Molecule 1 - RAB FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX HTB
    Expression System Strain: BL21 DE3 C+
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ROCCOR, UNP RESIDUES 412-946
    Gene: CT1526
    Mutation: YES
    Organism Scientific: CHLOROBACULUM TEPIDUM
    Organism Taxid: 1097
    Strain: CHLOROBIUM TEPIDUM TLS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3DPU)

(-) Sites  (0, 0)

(no "Site" information available for 3DPU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DPU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu B:769 -Gly B:770

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DPU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DPU)

(-) Exons   (0, 0)

(no "Exon" information available for 3DPU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:485
 aligned with Q8KC98_CHLTE | Q8KC98 from UniProtKB/TrEMBL  Length:1102

    Alignment length:519
                                   429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929         
         Q8KC98_CHLTE   420 PEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVIS 938
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh........eeeeeee.....hhhhhhhhhhh-----------...eeeee.hhhhhhh........eeeee...........hhhhhhh.eeeeeeehhhhhhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhh..eee...-----..hhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhh...hhhhhhhhhhhhhhh...............eehhhhhhhhhhhhhhh......eee..hhhhhhhh.-------------....hhhhhhhhhhhhhhh...ee....eee.hhhh....-----......eeeeeee.....hhhhhhhhhh...eeeeeee..eeeee.hhhh..eeeeeeehhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee..eeeeeeehhhhhhhhhh...eeee....eeeehhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dpu A 420 PEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG-----------GLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISC-----VESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEE-------------KFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQI-----ITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKMLDSVIS 938
                                   429       439       449       459       469    |    -      |489       499       509       519       529       539       549       559       569       579       589       599|     |609       619       629       639       649       659       669       679       689       699       709       719       729 |       -     | 749       759       769       779    |    -|      799       809       819       829       839       849       859       869       879       889       899       909       919       929         
                                                                                474         486                                                                                                               600   606                                                                                                                          731           745                                    784   790                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:328
 aligned with Q8KC98_CHLTE | Q8KC98 from UniProtKB/TrEMBL  Length:1102

    Alignment length:524
                                   426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936    
         Q8KC98_CHLTE   417 SPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVISKE 940
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...hhhhhhhhhhhhhhh....eehhhhhhhhhhhh...hhhhhhhhhhhhhhh...ee..........eehhhhhhhhhhhhhhhhhhh..eee..hhhhhhhh.-----------hhhhh.hhhhhhhhhhhhhhh...ee....eee.hhhh.........---...eeeeeee.....hhhhhhhhhhh..eeeeeee..eeeee.hhhh..eeeeeee....eeeeeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee..eeeeeeehhhhhhhhhh...eeee....eeeehhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dpu B 417 SPPPEIVKQGKEAVRQYFQSIEEARSK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEE-----------NNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPE---GEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDRYVSGKLEKVFSVSKMLDSVISKE 940
                                   426       436      |  -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -       626       636       646       656       666       676       686       696       706       716       726    |    -      |746       756       766       776       786  |   |796       806       816       826       836       846       856       866       876       886       896       906       916       926       936    
                                                    443                                                                                                                                                                                    626                                                                                                      731         743                                           789 793
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DPU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DPU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DPU)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8KC98_CHLTE | Q8KC98)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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Asymmetric/Biological Unit
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  Cis Peptide Bonds
    Glu B:769 - Gly B:770   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KC98_CHLTE | Q8KC98: 3dpt 5il7

(-) Related Entries Specified in the PDB File

3dpt