3DK4 - JenaLib

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:218 , HIS A:219 , THR A:257 , LEU A:258 , HOH A:1321 , HOH A:1360 , HOH A:1640	BINDING SITE FOR RESIDUE SO4 A 582
2	AC2	SOFTWARE	GLY A:27 , GLY A:29 , SER A:30 , GLY A:31 , GLU A:50 , SER A:51 , LYS A:53 , GLY A:56 , THR A:57 , CYS A:58 , GLY A:62 , CYS A:63 , LYS A:66 , GLY A:128 , HIS A:129 , ALA A:130 , ALA A:155 , THR A:156 , GLY A:157 , TYR A:197 , ARG A:291 , ASN A:294 , LEU A:298 , GLY A:330 , ASP A:331 , LEU A:337 , LEU A:338 , THR A:339 , PRO A:340 , HIS A:467 , PRO A:468 , HOH A:1001 , HOH A:1002 , HOH A:1007 , HOH A:1024 , HOH A:1063 , HOH A:1084 , HOH A:1269 , HOH A:1425	BINDING SITE FOR RESIDUE FAD A 479
3	AC3	SOFTWARE	GLY A:194 , ALA A:195 , GLY A:196 , TYR A:197 , ILE A:198 , ARG A:218 , HIS A:219 , ARG A:224 , SER A:225 , PHE A:226 , ALA A:288 , ILE A:289 , GLY A:290 , ALA A:336 , LEU A:337 , LEU A:338 , HOH A:1023 , HOH A:1027 , HOH A:1041 , HOH A:1081 , HOH A:1097 , HOH A:1105 , HOH A:1113 , HOH A:1119 , HOH A:1133 , HOH A:1163 , HOH A:1194 , HOH A:1220 , HOH A:1222 , HOH A:1300 , HOH A:1382 , HOH A:1437 , HOH A:1454 , HOH A:1566 , HOH A:1568 , HOH A:1621 , HOH A:1649 , HOH A:1658 , HOH A:1674 , HOH A:2125 , HOH A:2182 , HOH A:2212 , HOH A:2505 , HOH A:2513 , HOH A:3018 , HOH A:3104 , HOH A:3201 , HOH A:3210	BINDING SITE FOR RESIDUE NDP A 480
4	AC4	SOFTWARE	SER A:30 , ALA A:34 , ARG A:37 , CYS A:58 , TYR A:114 , THR A:339 , ILE A:343 , ARG A:347 , HIS A:467 , THR A:476 , HOH A:1058 , HOH A:1149 , HOH A:1191 , HOH A:1192 , HOH A:1303 , HOH A:1443 , HOH A:1655 , HOH A:1744 , HOH A:3002 , HOH A:9007	BINDING SITE FOR RESIDUE GSH A 481
5	AC5	SOFTWARE	ILE A:113 , TYR A:114 , PRO A:405 , MET A:406 , HIS A:467 , THR A:469 , GLU A:472 , GLU A:473 , HOH A:1019 , HOH A:1060 , HOH A:1061 , HOH A:1204 , HOH A:1327 , HOH A:1597 , HOH A:1655 , HOH A:1659 , HOH A:1765	BINDING SITE FOR RESIDUE GSH A 482

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (6, 6)

PROSITE Motifs (1, 1)

Exons (13, 13)

Asymmetric Unit (13, 13)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000221130	1a	ENSE00001167123	chr8:30585443-30585047	397	GSHR_HUMAN	1-102	102	1	A:17-58	42
1.3	ENST00000221130	3	ENSE00001158437	chr8:30569605-30569579	27	GSHR_HUMAN	103-111	9	1	A:59-67	9
1.4	ENST00000221130	4	ENSE00001158427	chr8:30567419-30567331	89	GSHR_HUMAN	112-141	30	1	A:68-97	30
1.5	ENST00000221130	5	ENSE00001158417	chr8:30565658-30565589	70	GSHR_HUMAN	141-164	24	1	A:97-120	24
1.6	ENST00000221130	6	ENSE00001158408	chr8:30560757-30560610	148	GSHR_HUMAN	165-214	50	1	A:121-170	50
1.7	ENST00000221130	7	ENSE00000687921	chr8:30557652-30557598	55	GSHR_HUMAN	214-232	19	1	A:170-188	19
1.8b	ENST00000221130	8b	ENSE00000687915	chr8:30553996-30553897	100	GSHR_HUMAN	232-265	34	1	A:188-221	34
1.9	ENST00000221130	9	ENSE00000687910	chr8:30550572-30550486	87	GSHR_HUMAN	266-294	29	1	A:222-250	29
1.10b	ENST00000221130	10b	ENSE00000687906	chr8:30546836-30546678	159	GSHR_HUMAN	295-347	53	1	A:251-303	53
1.11	ENST00000221130	11	ENSE00000687902	chr8:30541716-30541605	112	GSHR_HUMAN	348-385	38	1	A:304-341	38
1.12b	ENST00000221130	12b	ENSE00000687899	chr8:30539578-30539447	132	GSHR_HUMAN	385-429	45	1	A:341-385	45
1.13	ENST00000221130	13	ENSE00000687897	chr8:30538554-30538421	134	GSHR_HUMAN	429-473	45	1	A:385-429	45
1.14b	ENST00000221130	14b	ENSE00002132314	chr8:30537186-30535583	1604	GSHR_HUMAN	474-522	49	1	A:430-478	49

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:462
 aligned with GSHR_HUMAN | P00390 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:462
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520  
           GSHR_HUMAN    61 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 522
               SCOP domains d3dk4a1 A:17-165,A:291-363 Glutathione reductase                                                                                                     d3dk4a2 A:166-290 Glutathione reductase                                                                                      d3dk4a1 A:17-165,A:291-363 Glutathione reductase                         d3dk4a3 A:364-478 Glutathione reductase                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..eeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eee......eeee..eeee...eee...eee.........hhhhh.hhhhhh.......eeeee..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhh..eee..eeeeeeeee..eeeeeeee.......eeeeeeee.eeee...eee.....hhhhh......................eee.hhhhh...hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeee.hhhhhhh.....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) --------------------------------------------------------------------------------------------C------------------------------------------------------------------------------R----------------------------V-----------------------------------D----------------H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------PYRIDINE_RE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:17-58 UniProt: 1-102    Exon 1.3 Exon 1.4  PDB: A:68-97        -----------------------Exon 1.6  PDB: A:121-170 UniProt: 165-214         -----------------Exon 1.8b  PDB: A:188-221         Exon 1.9  PDB: A:222-250     Exon 1.10b  PDB: A:251-303 UniProt: 295-347          Exon 1.11  PDB: A:304-341             -------------------------------------------Exon 1.13  PDB: A:385-429 UniProt: 429-473   Exon 1.14b  PDB: A:430-478 UniProt: 474-522       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------Exon 1.5  PDB: A:97-120 -------------------------------------------------Exon 1.7           --------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12b  PDB: A:341-385 UniProt: 385-429  --------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3dk4 A  17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 478
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (18, 18)

Asymmetric Unit(hide GO term definitions)

Chain A (GSHR_HUMAN | P00390)

molecular function
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0004362	glutathione-disulfide reductase activity	Catalysis of the reaction: 2 glutathione + NADP+ = glutathione disulfide + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0006749	glutathione metabolic process	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
	GO:0015949	nucleobase-containing small molecule interconversion	The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0000302	response to reactive oxygen species	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0009897	external side of plasma membrane	The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		FAD	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GSH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NDP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		His A:374 - Pro A:375	[ RasMol ]
		His A:467 - Pro A:468	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	3dk4
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GSHR_HUMAN \| P00390
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.8.1.7
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)