Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  HUMAN GLUTATHIONE REDUCTASE A34E, R37W MUTANT, GLUTATHIONYLSPERMIDINE COMPLEX
 
Authors :  V. S. Stoll, S. J. Simpson, R. L. Krauth-Siegel, C. T. Walsh, E. F. Pai
Date :  12 Feb 97  (Deposition) - 12 Aug 97  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase, Flavoenzyme, Glutathionyl Spermidine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. S. Stoll, S. J. Simpson, R. L. Krauth-Siegel, C. T. Walsh, E. F. Pai
Glutathione Reductase Turned Into Trypanothione Reductase: Structural Analysis Of An Engineered Change In Substrate Specificity.
Biochemistry V. 36 6437 1997
PubMed-ID: 9174360  |  Reference-DOI: 10.1021/BI963074P
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE REDUCTASE
    CellRED BLOOD CELLS
    ChainsA
    EC Number1.6.4.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPUB302
    Expression System Taxid562
    MutationYES
    OrganBLOOD
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCONTAINS A NON-COVALENTLY BOUND FAD AND OXIDIZED GLUTATHIONYLSPERMIDINE SUBSTRATE
    SynonymGRTR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2TS41Ligand/IonGLUTATHIONYLSPERMIDINE DISULFIDE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2TS42Ligand/IonGLUTATHIONYLSPERMIDINE DISULFIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:27 , GLY A:29 , SER A:30 , GLY A:31 , VAL A:49 , GLU A:50 , SER A:51 , HIS A:52 , LYS A:53 , GLY A:56 , THR A:57 , CYS A:58 , GLY A:62 , CYS A:63 , LYS A:66 , GLY A:128 , HIS A:129 , ALA A:130 , ALA A:155 , THR A:156 , GLY A:157 , TYR A:197 , ARG A:291 , LEU A:298 , GLY A:330 , ASP A:331 , LEU A:337 , LEU A:338 , THR A:339 , PRO A:340 , ALA A:342 , HIS A:467BINDING SITE FOR RESIDUE FAD A 479
2AC2SOFTWARESER A:30 , GLU A:34 , GLY A:55 , CYS A:58 , VAL A:59 , TYR A:106 , LEU A:110 , ILE A:113 , TYR A:114 , THR A:339 , ILE A:343 , PHE A:403 , THR A:404 , MET A:406 , HIS A:467 , THR A:469 , GLU A:472 , GLU A:473 , THR A:476BINDING SITE FOR RESIDUE TS4 A 17
3S1UNKNOWNHIS A:467THE ACTIVE SITE HISTIDINE (HIS 467) IS FROM THE OTHER SUBUNIT.

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:58 -A:63
2A:90 -A:90

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:374 -Pro A:375
2His A:467 -Pro A:468

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GRT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GRT)

(-) Exons   (0, 0)

(no "Exon" information available for 5GRT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d5grta1 A:18-165,A:291-363 Glutathione reductase                                                                                                    d5grta2 A:166-290 Glutathione reductase                                                                                      d5grta1 A:18-165,A:291-363 Glutathione reductase                         d5grta3 A:364-478 Glutathione reductase                                                                             SCOP domains
               CATH domains 5grtA01 A:18-160,A:290-365  [code=3.50.50.60, no name defined]                                                                                 5grtA02 A:161-289  [code=3.50.50.60, no name defined]                                                                            5grtA01 A:18-160,A:290-365  [code=3.50.50.60, no name defined]              5grtA03 A:366-478  [code=3.30.390.30, no name defined]                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..eee.....eeee..eeee..eeeee.eeeee.......ehhhhhe.hhhhhhh....eeeeeee.hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhh.eeeeeeeeeeeeee..eeeeeeeee......eeeeeeeeeeeeee.eeeee....hhhhhh.eee..eeee....eeeee.eeeeehhhhh...hhhhhhhhhhhhhhhhh..............eee....eeeeeeehhhhhhhhhh..eeeeeeeee.hhhhh.......eeeeeeeee..eeeeeeeeee......hhhhhhhhhh..hhhhhhh.......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5grt A  18 VASYDYLVIGGGSGGLESAWRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 478
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric Unit

(-) CATH Domains  (2, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GRT)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TS4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    S1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    His A:374 - Pro A:375   [ RasMol ]  
    His A:467 - Pro A:468   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5grt
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GSHR_HUMAN | P00390
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.6.4.2
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  0135
    Age Related InformationGenAge
  0154
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  GSHR_HUMAN | P00390
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSHR_HUMAN | P003901alg 1bwc 1dnc 1gra 1grb 1gre 1grf 1grg 1grh 1grt 1gsn 1k4q 1xan 2aaq 2gh5 2grt 3djg 3djj 3dk4 3dk8 3dk9 3grs 3grt 3sqp 4gr1 4grt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GRT)