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(-) Description

Title :  4-CHLOROBENZOYL-COA LIGASE/SYNTHETASE, BOUND TO 4CBA-ADENYLATE
 
Authors :  A. S. Reger, J. Cao, R. Wu, D. Dunaway-Mariano, A. M. Gulick
Date :  21 Apr 08  (Deposition) - 02 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  X
Keywords :  Adenylate-Forming Enzymes, Acyl-Coa Ligase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Reger, R. Wu, D. Dunaway-Mariano, A. M. Gulick
Structural Characterization Of A 140 Degrees Domain Movemen In The Two-Step Reaction Catalyzed By 4-Chlorobenzoate:Coa Ligase.
Biochemistry V. 47 8016 2008
PubMed-ID: 18620418  |  Reference-DOI: 10.1021/BI800696Y
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 4-CHLOROBENZOYL COA LIGASE
    Chains: X
    EC Number: 6.2.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-70
    Expression System Strain: JM109
    Expression System Vector Type: PLASMID
    Organism Scientific: ALCALIGENES SP.
    Strain: AL3007
    Synonym: CHLOROBENZOATE COA LIGASE/SYNTHETASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
100A1Ligand/Ion5'-O-[(S)-{[(4-CHLOROPHENYL)CARBONYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
2EDO4Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR X:161 , HIS X:207 , GLY X:281 , ALA X:282 , THR X:283 , ASN X:302 , ILE X:303 , TYR X:304 , GLY X:305 , THR X:306 , THR X:307 , MET X:310 , ASN X:311 , MET X:324 , ASP X:385 , ARG X:400 , HOH X:1120 , HOH X:1127BINDING SITE FOR RESIDUE 00A X 909
2AC2SOFTWAREARG X:14 , HOH X:1118BINDING SITE FOR RESIDUE EDO X 801
3AC3SOFTWAREARG X:150 , HOH X:1050BINDING SITE FOR RESIDUE EDO X 802
4AC4SOFTWARELEU X:8 , HIS X:32 , ARG X:36 , HOH X:1059BINDING SITE FOR RESIDUE EDO X 803
5AC5SOFTWARETYR X:314 , MET X:315 , ARG X:316 , ALA X:325BINDING SITE FOR RESIDUE EDO X 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CW8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro X:143 -Pro X:144
2Gly X:166 -Leu X:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CW8)

(-) Exons   (0, 0)

(no "Exon" information available for 3CW8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:501
 aligned with Q8GN86_9BURK | Q8GN86 from UniProtKB/TrEMBL  Length:504

    Alignment length:502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  
         Q8GN86_9BURK     1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
               SCOP domains d3cw8x_ X: 4-chlorobenzoyl CoA ligase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3cw8X01 X:1-174  [code=3.40.50.980, no name defined]                                                                                                                          3cw8X02 X:175-321  [code=3.40.50.980, no name defined]                                                                                             3cw8X03 X:322-401 Luciferase; Domain 3                                          3cw8X04 X:402-502  [code=3.30.300.30,  no name defined]                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeeeehhhheeeehhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhh...eeee..hhhhhhhhhh.....eeeehhhhee..ee................eeeeeee.......eeeeee..hhhhhhhhhhhh.........eeee.....hhhhhh.hhhhhhhh..eeee....hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh..eeeeeeee...eeeeeee......ee.......eeee...............eeeeee...........hhhhhhhhee..eeeeeeeeee.....eeeeee....eee..eeehhhhhhhhhhh...eeeeeeeeeee.-.eeeeeeeeee......hhhhhhhhhhhh..hhhhh..eeee............hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cw8 X   1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ-WGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               438 |                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 440
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (3, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CW8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain X   (Q8GN86_9BURK | Q8GN86)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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        Q8GN86_9BURK | Q8GN86: 1t5d 1t5h 2qvx 2qvy 2qvz 2qw0 3cw9 3dlp

(-) Related Entries Specified in the PDB File

1pg4 1t5d 3cw9