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(-) Description

Title :  4-CHLOROBENZOYL-COA LIGASE/SYNTHETASE, I303G MUTATION, BOUND TO 3,4-DICHLOROBENZOATE
 
Authors :  R. Wu, A. S. Reger, J. Cao, A. M. Gulick, D. Dunaway-Mariano
Date :  09 Aug 07  (Deposition) - 18 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.76
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (2x)
Keywords :  Adenylate-Forming Enzymes, Acyl-Coa Ligase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Wu, A. S. Reger, J. Cao, A. M. Gulick, D. Dunaway-Mariano
Rational Redesign Of The 4-Chlorobenzoate Binding Site Of 4-Chlorobenzoate: Coenzyme A Ligase For Expanded Substrate Range.
Biochemistry V. 46 14487 2007
PubMed-ID: 18027984  |  Reference-DOI: 10.1021/BI701609W

(-) Compounds

Molecule 1 - 4-CHLOROBENZOATE COA LIGASE
    Chains: X
    EC Number: 6.2.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-70
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ALCALIGENES SP.
    Organism Taxid: 206162
    Strain: AL3007

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
134Z1Ligand/Ion3,4-DICHLOROBENZOATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
134Z2Ligand/Ion3,4-DICHLOROBENZOATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE X:184 , HIS X:207 , VAL X:209 , ALA X:280 , GLY X:303 , TYR X:304 , GLY X:305 , THR X:306 , MET X:310 , ASN X:311BINDING SITE FOR RESIDUE 34Z X 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QVY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser X:268 -Leu X:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QVY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QVY)

(-) Exons   (0, 0)

(no "Exon" information available for 2QVY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:499
 aligned with Q8GN86_9BURK | Q8GN86 from UniProtKB/TrEMBL  Length:504

    Alignment length:503
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
         Q8GN86_9BURK     1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503
               SCOP domains d2qvyx_ X: 4-chlorobenzoyl CoA ligase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2qvyX01 X:1-174  [code=3.40.50.980, no name defined]                                                                                                                          2qvyX02 X:175-321  [code=3.40.50.980, no name defined]                                                                                             2qvyX03 X:322-401 Luciferase; Domain 3                                          2qvyX04 X:402-503  [code=3.30.300.30, no name defined]                                                 CATH domains
               Pfam domains ------------------------------AMP-binding-2qvyX01 X:31-429                                                                                                                                                                                                                                                                                                                                                                                   -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeeee....eeeehhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhh...eeee..--.hhhhhhh.....eeee.hhh......................eeeeee..--.....eeeee..hhhhhhhhhhhh.........eeee.....hhhhhh.hhhhhhhh..eeee....hhhhhhhhhhhhh..eee.hhhhhhhhhhhhhh...........eeee.....hhhhhhhhhhhh..eeeeeeee...eeeeeee......ee.......eeee...............eeeeee...........hhhhhhhhee..eeeeeeeeee.....eeeeee....eee..eeehhhhhhhhhh....eeeeeeeeeee...eeeeeeeeee......hhhhhhhhhhh...hhhhh..eeee............hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qvy X   1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV--QVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTS--TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503
                                    10        20        30        40        50        60        70        80        90       100        |- |     120       130       140       150       160 |  |  170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
                                                                                                                                      109  |                                               162  |                                                                                                                                                                                                                                                                                                                                                  
                                                                                                                                         112                                                  165
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (3, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: ANL (32)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain X   (Q8GN86_9BURK | Q8GN86)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  6.2.1.33
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8GN86_9BURK | Q8GN86: 1t5d 1t5h 2qvx 2qvz 2qw0 3cw8 3cw9 3dlp

(-) Related Entries Specified in the PDB File

1pg4 1t5d 2qvx 2qvz 2qw0