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(-) Description

Title :  CRYSTAL STRUCTURE OF APO-FGD1 FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  G. Bashiri, C. J. Squire, N. J. Moreland, E. N. Baker
Date :  12 Feb 08  (Deposition) - 22 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Tim Barrel, Non-Prolyl Cis-Peptide, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Bashiri, C. J. Squire, N. J. Moreland, E. N. Baker
Crystal Structures Of F420-Dependent Glucose-6-Phosphate Dehydrogenase Fgd1 Involved In The Activation Of The Anti-Tuberculosis Drug Candidate Pa-824 Reveal The Basis Of Coenzyme And Substrate Binding.
J. Biol. Chem. V. 283 17531 2008
PubMed-ID: 18434308  |  Reference-DOI: 10.1074/JBC.M801854200

(-) Compounds

Molecule 1 - PROBABLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FGD1
    Atcc: 25618
    Chains: A, B, C, D
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS
    Expression System Plasmid: PYUB1049
    Expression System Strain: MC(2) 4517
    Expression System Taxid: 1772
    Expression System Vector Type: PLASMID
    Gene: FGD1, FGD, MT0420, RV0407
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: GLUCOSE-6-PHOSPHATE DEHYDROGENASE, F420-DEPENDENT

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 34)

Asymmetric Unit (1, 34)
No.NameCountTypeFull Name
1MSE34Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3C8N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3C8N)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:73 -Val A:74
2Ser B:73 -Val B:74
3Ser C:73 -Val C:74
4Ser D:73 -Val D:74

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C8N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3C8N)

(-) Exons   (0, 0)

(no "Exon" information available for 3C8N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with FGD_MYCTO | P9WNE0 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:344
                                      1                                                                                                                                                                                                                                                                                                                                             
                                     -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
            FGD_MYCTO     - ----------MAELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8na_ A: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhh.-..eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n A -12 HHHSSGLVPRGmELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWS-DRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    -3|||     10        20        30 |      40        50       |60        70        80        90  |    100       110       120       130       140   | | 150       160       170       180       190       200       210       220       230       240  |    250       260       270       280       290       300       310       320       330    
                                     -2||                           32-MSE                    58-MSE                             93-MSE                                       139-MSE4 |                                                           208-MSE             228-MSE        243-MSE                  268-MSE                                                              
                                       1-MSE                                                                                                                                         146                                                                                                                                                                                            
                                        3                                                                                                                                                                                                                                                                                                                                           


Chain A from PDB  Type:PROTEIN  Length:343
 aligned with FGD_MYCTU | P9WNE1 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:344
                                      1                                                                                                                                                                                                                                                                                                                                             
                                     -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
            FGD_MYCTU     - ----------MAELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8na_ A: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhh.-..eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n A -12 HHHSSGLVPRGmELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWS-DRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    -3|||     10        20        30 |      40        50       |60        70        80        90  |    100       110       120       130       140   | | 150       160       170       180       190       200       210       220       230       240  |    250       260       270       280       290       300       310       320       330    
                                     -2||                           32-MSE                    58-MSE                             93-MSE                                       139-MSE4 |                                                           208-MSE             228-MSE        243-MSE                  268-MSE                                                              
                                       1-MSE                                                                                                                                         146                                                                                                                                                                                            
                                        3                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:332
 aligned with FGD_MYCTO | P9WNE0 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
            FGD_MYCTO     1 MAELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nb_ B: automated matches                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -3c8nB00 B:2-334 FMN dependent fluorescent   proteins                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhh...eeee......--.......hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n B   1 mAELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQP--HQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                            |       10        20        30 |      40  |  |  50       |60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  |    250       260       270       280       290       300       310       320       330    
                            1-MSE                         32-MSE     43 46          58-MSE                             93-MSE                                       139-MSE                                                              208-MSE             228-MSE        243-MSE                  268-MSE                                                              


Chain B from PDB  Type:PROTEIN  Length:332
 aligned with FGD_MYCTU | P9WNE1 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
            FGD_MYCTU     1 MAELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nb_ B: automated matches                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -3c8nB00 B:2-334 FMN dependent fluorescent   proteins                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhh...eeee......--.......hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n B   1 mAELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQP--HQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                            |       10        20        30 |      40  |  |  50       |60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  |    250       260       270       280       290       300       310       320       330    
                            1-MSE                         32-MSE     43 46          58-MSE                             93-MSE                                       139-MSE                                                              208-MSE             228-MSE        243-MSE                  268-MSE                                                              


Chain C from PDB  Type:PROTEIN  Length:332
 aligned with FGD_MYCTO | P9WNE0 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:332
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332  
            FGD_MYCTO     3 ELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nc_ C: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 3c8nC00 C:3-334 FMN dependent fluorescent proteins                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhheee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n C   3 ELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    12        22        32        42        52     |  62        72        82        92|      102       112       122       132      |142       152       162       172       182       192       202     | 212       222     | 232       242|      252       262     | 272       282       292       302       312       322       332  
                                                        32-MSE                    58-MSE                             93-MSE                                       139-MSE                                                              208-MSE             228-MSE        243-MSE                  268-MSE                                                              


Chain C from PDB  Type:PROTEIN  Length:332
 aligned with FGD_MYCTU | P9WNE1 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:332
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332  
            FGD_MYCTU     3 ELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nc_ C: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 3c8nC00 C:3-334 FMN dependent fluorescent proteins                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh..hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhheee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n C   3 ELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLmRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    12        22        32        42        52     |  62        72        82        92|      102       112       122       132      |142       152       162       172       182       192       202     | 212       222     | 232       242|      252       262     | 272       282       292       302       312       322       332  
                                                        32-MSE                    58-MSE                             93-MSE                                       139-MSE                                                              208-MSE             228-MSE        243-MSE                  268-MSE                                                              


Chain D from PDB  Type:PROTEIN  Length:330
 aligned with FGD_MYCTO | P9WNE0 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:332
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332  
            FGD_MYCTO     3 ELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nd_ D: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 3c8nD00 D:3-334 FMN dependent fluorescent proteins                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh..-....hhhhhhhhhhhhhhhhhhhh.-..eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n D   3 ELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGY-GAWPEFKERFARLRESVGLmRQLWS-DRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    12        22        32        42        52     |  62        72        82        92|      102       112     | 122       132      |142 | |   152       162       172       182       192       202     | 212       222     | 232       242|      252       262     | 272       282       292       302       312       322       332  
                                                        32-MSE                    58-MSE                             93-MSE                  118 |                139-MSE4 |                                                           208-MSE             228-MSE        243-MSE                  268-MSE                                                              
                                                                                                                                               120                       146                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:330
 aligned with FGD_MYCTU | P9WNE1 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:332
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332  
            FGD_MYCTU     3 ELKLGYKASAEQFAPRELVELAVAAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATMGCLYPNRVFLGVGTGEALNEIATGYEGAWPEFKERFARLRESVGLMRQLWSGDRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLMPAVREGAAAADRSVDGIDKMIEIKISYDPDPELALNNTRFWAPLSLTAEQKHSIDDPIEMEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
               SCOP domains d3c8nd_ D: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 3c8nD00 D:3-334 FMN dependent fluorescent proteins                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh...eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh..-....hhhhhhhhhhhhhhhhhhhh.-..eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhhh.hhhhheeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c8n D   3 ELKLGYKASAEQFAPRELVELAVAAEAHGmDSATVSDHFQPWRHQGGHAPFSLSWmTAVGERTNRLLLGTSVLTPTFRYNPAVIAQAFATmGCLYPNRVFLGVGTGEALNEIATGY-GAWPEFKERFARLRESVGLmRQLWS-DRVDFDGDYYRLKGASIYDVPDGGVPVYIAAGGPAVAKYAGRAGDGFICTSGKGEELYTEKLmPAVREGAAAADRSVDGIDKmIEIKISYDPDPELAmNNTRFWAPLSLTAEQKHSIDDPIEmEKAADALPIEQIAKRWIVASDPDEAVEKVGQYVTWGLNHLVFHAPGHDQRRFLELFQSDLAPRLRR 334
                                    12        22        32        42        52     |  62        72        82        92|      102       112     | 122       132      |142 | |   152       162       172       182       192       202     | 212       222     | 232       242|      252       262     | 272       282       292       302       312       322       332  
                                                        32-MSE                    58-MSE                             93-MSE                  118 |                139-MSE4 |                                                           208-MSE             228-MSE        243-MSE                  268-MSE                                                              
                                                                                                                                               120                       146
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C8N)

(-) Gene Ontology  (12, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (FGD_MYCTU | P9WNE1)
molecular function
    GO:0070967    coenzyme F420 binding    Interacting selectively and non-covalently with F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0052749    glucose-6-phosphate dehydrogenase (coenzyme F420) activity    Catalysis of the reaction: beta-D-glucose 6-phosphate + coenzyme F420 + H+ = 6-O-phosphono-D-glucono-1,5-lactone + reduced coenzyme F420.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D   (FGD_MYCTO | P9WNE0)
molecular function
    GO:0070967    coenzyme F420 binding    Interacting selectively and non-covalently with F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0052749    glucose-6-phosphate dehydrogenase (coenzyme F420) activity    Catalysis of the reaction: beta-D-glucose 6-phosphate + coenzyme F420 + H+ = 6-O-phosphono-D-glucono-1,5-lactone + reduced coenzyme F420.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGD_MYCTO | P9WNE0: 3b4y
        FGD_MYCTU | P9WNE1: 3b4y

(-) Related Entries Specified in the PDB File

3b4y FGD1 (RV0407) FROM MYCOBACTERIUM TUBERCULOSIS WITH F420 AND CITRATE BOUND