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(-) Description

Title :  ALPHA/BETA-PEPTIDE HELIX BUNDLES: THE GCN4-PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-ALPHA-BETA) BACKBONE
 
Authors :  W. S. Horne, J. L. Price, S. H. Gellman
Date :  28 Jan 08  (Deposition) - 17 Jun 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Helix Bundle, Foldamer, Unknown Function, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Horne, J. L. Price, S. H. Gellman
Interplay Among Side Chain Sequence, Backbone Composition, And Residue Rigidification In Polypeptide Folding And Assembly.
Proc. Natl. Acad. Sci. Usa V. 105 9151 2008
PubMed-ID: 18587049  |  Reference-DOI: 10.1073/PNAS.0801135105

(-) Compounds

Molecule 1 - ALPHA/BETA PEPTIDE WITH THE GCN4-PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-ALPHA-BETA) BACKBONE
    Chains: A, B, C, D
    Engineered: YES
    Other Details: SYNTHETIC PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 36)

Asymmetric/Biological Unit (7, 36)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2B3D4Mod. Amino Acid3-AMINOPENTANEDIOIC ACID
3B3E4Mod. Amino Acid(3S)-3-AMINOHEXANEDIOIC ACID
4B3K12Mod. Amino Acid(3S)-3,7-DIAMINOHEPTANOIC ACID
5B3L4Mod. Amino Acid(3S)-3-AMINO-5-METHYLHEXANOIC ACID
6BAL4Mod. Amino AcidBETA-ALANINE
7BIL4Mod. Amino Acid(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 3C3F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3C3F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3C3F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C3F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3C3F)

(-) Exons   (0, 0)

(no "Exon" information available for 3C3F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains -d3c3fa1 A:1-32 GCN4              SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  3c3f A  0 xRMkQIEdKLEeILSkLYHxENExARIkKLLaE 32
                            |  |   | 9 |   |  19   |   |29 | 
                            |  |   |   |   |   |   |   |   | 
                            0-ACE  |   |   |   |   |   |   | 
                               3-B3K   |   |   |   |   |   | 
                                   7-B3D   |   |   |   |   | 
                                      11-B3E   |   |   |   | 
                                          15-B3K   |   |   | 
                                              19-BIL   |   | 
                                                  23-B3L   | 
                                                      27-B3K 


Chain B from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains -d3c3fb1 B:1-32 GCN4              SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  3c3f B  0 xRMkQIEdKLEeILSkLYHxENExARIkKLLaE 32
                            |  |   | 9 |   |  19   |   |29 | 
                            |  |   |   |   |   |   |   |   | 
                            0-ACE  |   |   |   |   |   |   | 
                               3-B3K   |   |   |   |   |   | 
                                   7-B3D   |   |   |   |   | 
                                      11-B3E   |   |   |   | 
                                          15-B3K   |   |   | 
                                              19-BIL   |   | 
                                                  23-B3L   | 
                                                      27-B3K 


Chain C from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains -d3c3fc1 C:1-32 GCN4              SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  3c3f C  0 xRMkQIEdKLEeILSkLYHxENExARIkKLLaE 32
                            |  |   | 9 |   |  19   |   |29 | 
                            |  |   |   |   |   |   |   |   | 
                            0-ACE  |   |   |   |   |   |   | 
                               3-B3K   |   |   |   |   |   | 
                                   7-B3D   |   |   |   |   | 
                                      11-B3E   |   |   |   | 
                                          15-B3K   |   |   | 
                                              19-BIL   |   | 
                                                  23-B3L   | 
                                                      27-B3K 


Chain D from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains -d3c3fd1 D:1-32 GCN4              SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  3c3f D  0 xRMkQIEdKLEeILSkLYHxENExARIkKLLaE 32
                            |  |   | 9 |   |  19   |   |29 | 
                            |  |   |   |   |   |   |   |   | 
                            0-ACE  |   |   |   |   |   |   | 
                               3-B3K   |   |   |   |   |   | 
                                   7-B3D   |   |   |   |   | 
                                      11-B3E   |   |   |   | 
                                          15-B3K   |   |   | 
                                              19-BIL   |   | 
                                                  23-B3L   | 
                                                      27-B3K
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3C3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C3F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3C3F)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3C3F)

(-) Related Entries Specified in the PDB File

1gcl SAME PRIMARY SEQUENCE OF SIDE CHAINS ON AN ALL ALPHA- RESIDUE BACKBONE
1uo2 SAME PRIMARY SEQUENCE OF SIDE CHAINS ON AN ALL ALPHA- RESIDUE BACKBONE
2oxk SAME PRIMARY SEQUENCE OF SIDE CHAINS ON A DIFFERENT ALPHA/ BETA BACKBONE PATTERN
3c3g
3c3h