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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PHOTOSENSORY CORE DOMAIN OF P. AERUGINOSA BACTERIOPHYTOCHROME PABPHP IN THE PFR STATE
 
Authors :  X. Yang, J. Kuk, K. Moffat
Date :  25 Jan 08  (Deposition) - 23 Sep 08  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  E,F  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  G,H  (1x)
Biol. Unit 4:  A,B  (1x)
Keywords :  Knot Structure, Chromophore, Kinase, Phosphoprotein, Photoreceptor Protein, Receptor, Sensory Transduction, Transferase, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Yang, J. Kuk, K. Moffat
Crystal Structure Of Pseudomonas Aeruginosa Bacteriophytochrome: Photoconversion And Signal Transduction.
Proc. Natl. Acad. Sci. Usa V. 105 14715 2008
PubMed-ID: 18799746  |  Reference-DOI: 10.1073/PNAS.0806718105

(-) Compounds

Molecule 1 - BACTERIOPHYTOCHROME
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.13.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PHOTOSENSORY CORE DOMAIN
    Gene: BPHP, PA4117
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Strain: PA01
    Synonym: PHYTOCHROME-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x):     EF  
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):       GH
Biological Unit 4 (1x): AB      

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1BLA8Ligand/IonBILIVERDINE IX ALPHA
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1BLA2Ligand/IonBILIVERDINE IX ALPHA
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1BLA2Ligand/IonBILIVERDINE IX ALPHA
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1BLA2Ligand/IonBILIVERDINE IX ALPHA
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1BLA2Ligand/IonBILIVERDINE IX ALPHA

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:12 , GLU A:13 , TYR A:163 , GLN A:188 , TYR A:190 , SER A:193 , ASP A:194 , ILE A:195 , PRO A:196 , TYR A:203 , ARG A:209 , HIS A:247 , TYR A:250 , SER A:275 , HIS A:277 , HOH A:901 , HOH A:905BINDING SITE FOR RESIDUE BLA A 900
2AC2SOFTWARECYS B:12 , TYR B:163 , GLN B:188 , TYR B:190 , ASP B:194 , PRO B:196 , TYR B:203 , ARG B:209 , SER B:244 , HIS B:247 , TYR B:250 , SER B:259 , SER B:275 , HIS B:277BINDING SITE FOR RESIDUE BLA B 900
3AC3SOFTWARECYS C:12 , ILE C:17 , TYR C:163 , GLN C:188 , TYR C:190 , SER C:193 , ASP C:194 , PRO C:196 , TYR C:203 , ARG C:209 , HIS C:247 , TYR C:250 , SER C:275 , HIS C:277 , ARG C:453 , HOH C:901BINDING SITE FOR RESIDUE BLA C 900
4AC4SOFTWARECYS D:12 , GLU D:13 , TYR D:163 , GLN D:188 , TYR D:190 , ASP D:194 , TYR D:203 , ARG D:209 , SER D:244 , ILE D:246 , HIS D:247 , TYR D:250 , SER D:275 , HIS D:277 , HOH D:902BINDING SITE FOR RESIDUE BLA D 900
5AC5SOFTWARECYS E:12 , TYR E:163 , TYR E:185 , TYR E:190 , ASP E:194 , PRO E:196 , TYR E:203 , ARG E:209 , SER E:244 , HIS E:247 , TYR E:250 , SER E:275 , HIS E:277BINDING SITE FOR RESIDUE BLA E 900
6AC6SOFTWARECYS F:12 , TYR F:163 , GLN F:188 , ASP F:194 , PRO F:196 , TYR F:203 , ARG F:209 , ARG F:241 , SER F:244 , HIS F:247 , TYR F:250 , SER F:275 , HOH F:901BINDING SITE FOR RESIDUE BLA F 900
7AC7SOFTWARECYS G:12 , TYR G:163 , TYR G:185 , GLN G:188 , TYR G:190 , ASP G:194 , ILE G:195 , PRO G:196 , TYR G:203 , ARG G:209 , ILE G:211 , HIS G:247 , TYR G:250 , SER G:275 , HIS G:277 , HOH G:901 , HOH G:905BINDING SITE FOR RESIDUE BLA G 900
8AC8SOFTWARECYS H:12 , TYR H:163 , GLN H:188 , TYR H:190 , ASP H:194 , TYR H:203 , ARG H:209 , ARG H:241 , SER H:244 , TYR H:250 , SER H:275 , HIS H:277 , HOH H:902BINDING SITE FOR RESIDUE BLA H 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3C2W)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Phe A:222 -Pro A:223
2Phe B:222 -Pro B:223
3Phe C:222 -Pro C:223
4Phe D:222 -Pro D:223
5Phe E:222 -Pro E:223
6Phe F:222 -Pro F:223
7Phe G:222 -Pro G:223
8Gly H:78 -Asn H:79
9Phe H:222 -Pro H:223

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3C2W)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHYTOCHROME_2PS50046 Phytochrome chromophore attachment site domain profile.BPHY_PSEAE139-297
 
 
 
 
 
 
 		  8A:139-297
B:139-297
C:139-297
D:139-297
E:139-297
F:139-297
G:139-297
H:139-297
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHYTOCHROME_2PS50046 Phytochrome chromophore attachment site domain profile.BPHY_PSEAE139-297
 
 
 
 
 
 
 		  2-
-
-
-
E:139-297
F:139-297
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHYTOCHROME_2PS50046 Phytochrome chromophore attachment site domain profile.BPHY_PSEAE139-297
 
 
 
 
 
 
 		  2-
-
C:139-297
D:139-297
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHYTOCHROME_2PS50046 Phytochrome chromophore attachment site domain profile.BPHY_PSEAE139-297
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:139-297
H:139-297
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHYTOCHROME_2PS50046 Phytochrome chromophore attachment site domain profile.BPHY_PSEAE139-297
 
 
 
 
 
 
 		  2A:139-297
B:139-297
-
-
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3C2W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:490
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCL 494
               SCOP domains d3c2wa3 A:5-117 Bacteriophytochrome BphP                                                                         d3c2wa1 A:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wa2 A:310-494 Bacteriophytochrome BphP                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......ee...eeeeee.....eeeee.hhhhhh..........hhhhhhhhhhhhhhhhhh.......eeee......eeeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeeee..........eehhhhhhhhhhhhhhh..eeee.......eeee.....................hhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh....hhhhhh...eeeeee..eeeee...hhhhhhhhhhhhh......eeee...------------..eeeeeeee....eeeeeee......eeee................hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: A:139-297 UniProt: 139-297                                                                                                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c2w A   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCL 494
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -   |   414       424       434       444       454       464       474       484       494
                                                                                                                                                                                                                                                                                                                                                                                                                                395          408                                                                                      


Chain B from PDB  Type:PROTEIN  Length:468
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:493
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494   
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHA 497
               SCOP domains d3c2wb3 B:5-117 Bacteriophytochrome BphP                                                                         d3c2wb1 B:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wb2 B:310-497 Bacteriophytochrome BphP                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh........ee...eeeeee.....eeeee.hhhhhh..........hhhhhhhhhhhhhhhhhh.....eeeeee......eeeeeeee..eeeeeeee.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeee.......eeeeee.............hhhhhhhhhhhhhhhh.eeee.......eeee.....................hhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh............eeeeee..eeeee...hhhhhhhhhh.........eeee...------------..eeeeeeee....eeeeeee....-------------.........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: B:139-297 UniProt: 139-297                                                                                                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c2w B   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEV-------------TIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHA 497
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -   |   414       424       | -         - |     454       464       474       484       494   
                                                                                                                                                                                                                                                                                                                                                                                                                                395          408                     432           446                                                   


Chain C from PDB  Type:PROTEIN  Length:482
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:492
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494  
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
               SCOP domains d3c2wc3 C:5-117 Bacteriophytochrome BphP                                                                         d3c2wc1 C:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wc2 C:310-496 Bacteriophytochrome BphP                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh......ee...eeeeee.......eee.hhhhhh...............hhhhhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeeee..........ee.....hhhhhhhhhhh..eee.......eeee.....................hhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh....hhhhh....eeeeee..eeeee.....hhhhhhhhhhhhh....eeee...----------....eeeeeeee....eeeeeee......................hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: C:139-297 UniProt: 139-297                                                                                                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3c2w C   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW----------GDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        - |     414       424       434       444       454       464       474       484       494  
                                                                                                                                                                                                                                                                                                                                                                                                                                395        406                                                                                          


Chain D from PDB  Type:PROTEIN  Length:478
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:492
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494  
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
               SCOP domains d3c2wd3 D:5-117 Bacteriophytochrome BphP                                                                         d3c2wd1 D:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wd2 D:310-496 Bacteriophytochrome BphP                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh......ee....eeeee.....eeeee.hhhhhh..........hhhhhhhhhhhhhhhhhhh....eeeeeeee..eeeeeeeeee..eeeeeeee...........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeeee..........ee.....hhhhhhhhhhh.eeee.......eeee.....................hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhh....hhhhhh...eeeee.....eee...hhhhhhhhhhh........eeee...-----------...eeeeeeee....eeeeeee......eeee---.............hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: D:139-297 UniProt: 139-297                                                                                                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3c2w D   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW-----------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWG---EKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -  |    414       424       434   |   444       454       464       474       484       494  
                                                                                                                                                                                                                                                                                                                                                                                                                                395         407                            438 442                                                      


Chain E from PDB  Type:PROTEIN  Length:471
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:491
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494 
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLN 495
               SCOP domains d3c2we3 E:5-115 Bacteriophytochrome BphP                                                                         d3c2we1 E:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2we2 E:310-495 Bacteriophytochrome BphP                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................ee...eeeeee.....eeeee......................hhhhhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eeeeeeee...--..hhhhhh.hhhhhhhh....hhhhhhhhhhhhhhhhhh..eeeeee.......eeeeeee.................hhhhhhhhhhh.eeee.......eeee.....................hhhhhhhhhhhh...eeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhh...hhhhh...hhhhhh....eeeee..eee.....hhhhhhhhhhh........eeee...------------..eeeeeeee....eeeeeee......eeee.------.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: E:139-297 UniProt: 139-297                                                                                                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c2w E   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTA--LSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGG------TIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLN 495
                                    14        24        34        44        54        64        74        84        94       104       114|  |   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -   |   414       424       434    |    - |     454       464       474       484       494 
                                                                                                                                        115  |                                                                                                                                                                                                                                                                                  395          408                            439    446                                                 
                                                                                                                                           118                                                                                                                                                                                                                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:469
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:494
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494    
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHAA 498
               SCOP domains d3c2wf3 F:5-117 Bacteriophytochrome BphP                                                                         d3c2wf1 F:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wf2 F:310-498 Bacteriophytochrome BphP                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................ee...eeeeee........ee.hhhhhh..........hhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeeee..eeeeeeee..--.....hhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeeee.....eeeeeee...........eehhhhh..hhhhhh....eeee.......eeee.....................hhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh...hhhhhh...eeeeee..eeeee...hhhhhhhhhhh........eeee...-----------...eeeeeeee....eeeeeee....------------..........hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: F:139-297 UniProt: 139-297                                                                                                                 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c2w F   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRT--TLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW-----------DCCGVLAIRFHRQESGWIFWFRHEEV------------LTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHAL 498
                                    14        24        34        44        54        64        74        84        94       104       114  |    124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -  |    414       424       | -         -|      454       464       474       484       494    
                                                                                                                                       114  |                                                                                                                                                                                                                                                                                   395         407                      432          445                                                     
                                                                                                                                          117                                                                                                                                                                                                                                                                                                                                                                                             


Chain G from PDB  Type:PROTEIN  Length:482
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:493
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494   
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHA 497
               SCOP domains d3c2wg3 G:5-117 Bacteriophytochrome BphP                                                                         d3c2wg1 G:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wg2 G:310-497 Bacteriophytochrome BphP                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......ee...eeeeee.....eeeee.hhhhhhh..............hhhhhhhhhhhhhh.....eeeeee....eeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..eeeeeee.....eeeeeeee..........ee.....hhhhhhhhhh..eeee.......eeee.....................hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhh....hhhhhh...eeeeee..eeeee...hhhhhhhhhhhh.......eeee...-----------...eeeeeeee....eeeeeee......eeee................hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: G:139-297 UniProt: 139-297                                                                                                                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c2w G   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW-----------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHA 497
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -  |    414       424       434       444       454       464       474       484       494   
                                                                                                                                                                                                                                                                                                                                                                                                                                395         407                                                                                          


Chain H from PDB  Type:PROTEIN  Length:480
 aligned with BPHY_PSEAE | Q9HWR3 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:492
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494  
           BPHY_PSEAE     5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
               SCOP domains d3c2wh3 H:5-117 Bacteriophytochrome BphP                                                                         d3c2wh1 H:118-309 Bacteriophytochrome BphP                                                                                                                                                      d3c2wh2 H:310-496 Bacteriophytochrome BphP                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhh........ee...eeeeee.....eeeee.hhh.............hhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eeeeeee.......hhhhhh..............hhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeee...........ee.....hhhhhhhhhhh.eeee.......eeee.....................hhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee......hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh....hhhhhh...eeeeee..eeeee...hhhhhhhhhhhhhhh....eeee...------------..eeeeeeee....eeeeeee......ee..................hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------PHYTOCHROME_2  PDB: H:139-297 UniProt: 139-297                                                                                                                 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3c2w H   5 TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH 496
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394|        -   |   414       424       434       444       454       464       474       484       494  
                                                                                                                                                                                                                                                                                                                                                                                                                                395          408
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 24)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3C2W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3C2W)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (BPHY_PSEAE | Q9HWR3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0009881    photoreceptor activity    The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
    GO:0004673    protein histidine kinase activity    Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009584    detection of visible light    The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BPHY_PSEAE | Q9HWR3: 3g6o 3ibr 3nhq 3nop 3not 3nou

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3C2W)