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(-) Description

Title :  HEPATOSELECTIVITY OF STATINS: DESIGN AND SYNTHESIS OF 4-SULFAMOYL PYRROLES AS HMG-COA REDUCTASE INHIBITORS
 
Authors :  B. C. Finzel, A. Pavlovsky, W. K. C. Park
Date :  26 Nov 07  (Deposition) - 29 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Cholesterol Biosynthesis, Hmg-Coa, Nadph, Statin, Alternative Splicing, Endoplasmic Reticulum, Glycoprotein, Lipid Synthesis, Membrane, Peroxisome, Polymorphism, Steroid Biosynthesis, Transmembrane (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. K. Park, R. M. Kennedy, S. D. Larsen, S. Miller, B. D. Roth, Y. Song, B. A. Steinbaugh, K. Sun, B. D. Tait, M. C. Kowala, B. K. Trivedi, B. Auerbach, V. Askew, L. Dillon, J. C. Hanselman, Z. Lin, G. H. Lu, A. Robertson, C. Sekerke
Hepatoselectivity Of Statins: Design And Synthesis Of 4-Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors.
Bioorg. Med. Chem. Lett. V. 18 1151 2008
PubMed-ID: 18155906  |  Reference-DOI: 10.1016/J.BMCL.2007.11.124
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
    ChainsA, B, C, D
    EC Number1.1.1.34
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21 STAR
    Expression System Taxid562
    FragmentCATALYTIC DOMAIN (RESIDUES 441-875)
    GeneHMGCR
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHMG-COA REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1RID4Ligand/Ion(3R,5R)-7-[2-(4-FLUOROPHENYL)-5-(1-METHYLETHYL)-4-(MORPHOLIN-4-YLSULFONYL)-3-PHENYL-1H-PYRROL-1-YL]-3,5-DIHYDROXYHEPTANOIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:590 , SER A:661 , VAL A:683 , SER A:684 , ASN A:686 , ASP A:690 , LYS A:691 , LYS A:692 , HOH A:878 , GLU B:559 , GLY B:560 , CYS B:561 , SER B:565 , LYS B:735 , ALA B:751 , ASN B:755 , ALA B:856 , LEU B:857 , HOH B:1034BINDING SITE FOR RESIDUE RID A 2
2AC2SOFTWAREGLU A:559 , GLY A:560 , CYS A:561 , LEU A:562 , SER A:565 , LYS A:735 , ALA A:751 , ASN A:755 , LEU A:853 , ALA A:856 , ARG B:590 , SER B:661 , VAL B:683 , SER B:684 , ASN B:686 , ASP B:690 , LYS B:691 , LYS B:692 , HOH B:904 , HOH B:1035BINDING SITE FOR RESIDUE RID B 1
3AC3SOFTWAREARG C:590 , SER C:661 , VAL C:683 , SER C:684 , ASP C:690 , LYS C:691 , LYS C:692 , HOH C:880 , GLU D:559 , GLY D:560 , CYS D:561 , LEU D:562 , SER D:565 , LYS D:735 , ALA D:751 , ASN D:755 , ALA D:856BINDING SITE FOR RESIDUE RID C 4
4AC4SOFTWAREGLU C:559 , GLY C:560 , CYS C:561 , LEU C:562 , SER C:565 , LYS C:735 , ALA C:751 , ASN C:755 , LEU C:853 , ALA C:856 , ARG D:590 , MET D:657 , SER D:661 , VAL D:683 , SER D:684 , ASP D:690 , LYS D:691 , LYS D:692 , HOH D:963 , HOH D:1114BINDING SITE FOR RESIDUE RID D 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BGL)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly A:542 -Pro A:543
2Cys A:688 -Thr A:689
3Gly B:542 -Pro B:543
4Cys B:688 -Thr B:689
5Gly C:542 -Pro C:543
6Cys C:688 -Thr C:689
7Gly D:542 -Pro D:543
8Cys D:688 -Thr D:689

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric/Biological Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011954I638VHMDH_HUMANPolymorphism5908A/B/C/DI638V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 16)

Asymmetric/Biological Unit (4, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HMG_COA_REDUCTASE_4PS50065 Hydroxymethylglutaryl-coenzyme A reductases family profile.HMDH_HUMAN464-871
 
 
 
  4A:464-861
B:464-861
C:464-860
D:464-859
2HMG_COA_REDUCTASE_1PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1.HMDH_HUMAN646-660
 
 
 
  4A:646-660
B:646-660
C:646-660
D:646-660
3HMG_COA_REDUCTASE_2PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2.HMDH_HUMAN802-809
 
 
 
  4A:802-809
B:802-809
C:802-809
D:802-809
4HMG_COA_REDUCTASE_3PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3.HMDH_HUMAN856-869
 
 
 
  4A:856-861
B:856-861
C:856-860
D:856-859

(-) Exons   (9, 36)

Asymmetric/Biological Unit (9, 36)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000002879362aENSE00001378703chr5:74632993-74633125133HMDH_HUMAN-00--
1.5bENST000002879365bENSE00002182886chr5:74638408-74638595188HMDH_HUMAN1-55550--
1.6aENST000002879366aENSE00000753569chr5:74639678-74639789112HMDH_HUMAN56-93380--
1.7bENST000002879367bENSE00000753572chr5:74640070-7464015788HMDH_HUMAN93-122300--
1.8ENST000002879368ENSE00000753575chr5:74641399-7464148385HMDH_HUMAN122-150290--
1.9ENST000002879369ENSE00000753578chr5:74643029-74643134106HMDH_HUMAN151-186360--
1.10bENST0000028793610bENSE00000753581chr5:74645867-74645973107HMDH_HUMAN186-221360--
1.11ENST0000028793611ENSE00000753584chr5:74646083-74646199117HMDH_HUMAN222-260390--
1.12ENST0000028793612ENSE00000753587chr5:74646614-74646774161HMDH_HUMAN261-314540--
1.13aENST0000028793613aENSE00000753589chr5:74646893-74647140248HMDH_HUMAN314-397840--
1.13cENST0000028793613cENSE00000753591chr5:74647249-74647427179HMDH_HUMAN397-456604A:441-456
B:441-456
C:444-454
D:442-449
16
16
11
8
1.14cENST0000028793614cENSE00000753593chr5:74650328-74650522195HMDH_HUMAN457-521654A:457-521
B:457-521
C:458-521
D:458-521
65
65
64
64
1.15bENST0000028793615bENSE00000753595chr5:74650881-74651039159HMDH_HUMAN522-574534A:522-574
B:522-574
C:522-574
D:522-574
53
53
53
53
1.15dENST0000028793615dENSE00000753597chr5:74651190-74651347158HMDH_HUMAN575-627534A:575-627
B:575-627
C:575-627
D:575-627
53
53
53
53
1.16aENST0000028793616aENSE00000753599chr5:74652168-74652273106HMDH_HUMAN627-662364A:627-662
B:627-662
C:627-662
D:627-662
36
36
36
36
1.17bENST0000028793617bENSE00000753601chr5:74654482-74654652171HMDH_HUMAN663-719574A:663-719
B:663-719
C:663-719
D:663-719
57
57
57
57
1.18aENST0000028793618aENSE00000753603chr5:74654995-74655135141HMDH_HUMAN720-766474A:720-766
B:720-766
C:720-766
D:720-766
47
47
47
47
1.19aENST0000028793619aENSE00000753605chr5:74655223-74655381159HMDH_HUMAN767-819534A:767-819
B:767-819
C:767-819
D:767-819
53
53
53
53
1.20bENST0000028793620bENSE00000753607chr5:74655810-74655964155HMDH_HUMAN820-871524A:820-861
B:820-861
C:820-860
D:820-859
42
42
41
40
1.21gENST0000028793621gENSE00001859900chr5:74656113-746579291817HMDH_HUMAN871-888180--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:421
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:421
                                   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860 
           HMDH_HUMAN   441 EPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGH 861
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------3bglA01 A:462-536 HMGR, N-terminal domain                                  3bglA02 A:537-585,A:704-861                      -3bglA03 A:587-703  [code=3.30.70.420, no name defined]                                                               3bglA02 A:537-585,A:704-861 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhhh.hhhhhhhhhhhhhhhh...............hhhhh.......eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhh...eeeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeeeeee......hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhh.hhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------HMG_COA_REDUCTASE_4  PDB: A:464-861 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_CO PROSITE (2)
           Transcript 1 (1) Exon 1.13c      Exon 1.14c  PDB: A:457-521 UniProt: 457-521                      Exon 1.15b  PDB: A:522-574 UniProt: 522-574          Exon 1.15d  PDB: A:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: A:663-719 UniProt: 663-719              Exon 1.18a  PDB: A:720-766 UniProt: 720-766    Exon 1.19a  PDB: A:767-819 UniProt: 767-819          Exon 1.20b  PDB: A:820-861 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: A:627-662          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3bgl A 441 EPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGH 861
                                   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860 

Chain B from PDB  Type:PROTEIN  Length:421
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:421
                                   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860 
           HMDH_HUMAN   441 EPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGH 861
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------3bglB01 B:462-536 HMGR, N-terminal domain                                  3bglB02 B:537-585,B:704-861                      -3bglB03 B:587-703  [code=3.30.70.420, no name defined]                                                               3bglB02 B:537-585,B:704-861 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhh............................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhh.hhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------HMG_COA_REDUCTASE_4  PDB: B:464-861 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_CO PROSITE (2)
           Transcript 1 (1) Exon 1.13c      Exon 1.14c  PDB: B:457-521 UniProt: 457-521                      Exon 1.15b  PDB: B:522-574 UniProt: 522-574          Exon 1.15d  PDB: B:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: B:663-719 UniProt: 663-719              Exon 1.18a  PDB: B:720-766 UniProt: 720-766    Exon 1.19a  PDB: B:767-819 UniProt: 767-819          Exon 1.20b  PDB: B:820-861 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: B:627-662          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3bgl B 441 EPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGH 861
                                   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860 

Chain C from PDB  Type:PROTEIN  Length:414
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:417
                                   453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       
           HMDH_HUMAN   444 PNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------3bglC01 C:462-536 HMGR, N-terminal domain                                  3bglC02 C:537-585,C:704-860                      -3bglC03 C:587-703  [code=3.30.70.420, no name defined]                                                               3bglC02 C:537-585,C:704-860 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh---hhhhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhh.hhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------------HMG_COA_REDUCTASE_4  PDB: C:464-860 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                          PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_C PROSITE (2)
           Transcript 1 (1) Exon 1.13c   Exon 1.14c  PDB: C:458-521 UniProt: 457-521 [INCOMPLETE]         Exon 1.15b  PDB: C:522-574 UniProt: 522-574          Exon 1.15d  PDB: C:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: C:663-719 UniProt: 663-719              Exon 1.18a  PDB: C:720-766 UniProt: 720-766    Exon 1.19a  PDB: C:767-819 UniProt: 767-819          Exon 1.20b  PDB: C:820-860 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: C:627-662          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 3bgl C 444 PNEECLQILGN---GAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
                                   453|   |  463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       
                                    454 458                                                                                                                                                                                                                                                                                                                                                                                                                  

Chain D from PDB  Type:PROTEIN  Length:410
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:418
                                   451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851        
           HMDH_HUMAN   442 PRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAA 859
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----------------3bglD01 D:459-536 HMGR, N-terminal domain                                     3bglD02 D:537-585,D:704-859                      -3bglD03 D:587-703  [code=3.30.70.420, no name defined]                                                               3bglD02 D:537-585,D:704-859 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh--------hhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------HMG_COA_REDUCTASE_4  PDB: D:464-859 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_ PROSITE (2)
           Transcript 1 (1) Exon 1.13c     Exon 1.14c  PDB: D:458-521 UniProt: 457-521 [INCOMPLETE]         Exon 1.15b  PDB: D:522-574 UniProt: 522-574          Exon 1.15d  PDB: D:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: D:663-719 UniProt: 663-719              Exon 1.18a  PDB: D:720-766 UniProt: 720-766    Exon 1.19a  PDB: D:767-819 UniProt: 767-819          Exon 1.20b  PDB: D:820-859 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: D:627-662          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3bgl D 442 PRPNEECL--------GAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAA 859
                                   | -      |461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851        
                                 449      458                                                                                                                                                                                                                                                                                                                                                                                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BGL)

(-) CATH Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BGL)

(-) Gene Ontology  (43, 43)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (HMDH_HUMAN | P04035)
molecular function
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0070402    NADPH binding    Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0050662    coenzyme binding    Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
    GO:0004420    hydroxymethylglutaryl-CoA reductase (NADPH) activity    Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH.
    GO:0042282    hydroxymethylglutaryl-CoA reductase activity    Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0051721    protein phosphatase 2A binding    Interacting selectively and non-covalently with the enzyme protein phosphatase 2A.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0006695    cholesterol biosynthetic process    The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0015936    coenzyme A metabolic process    The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
    GO:0008299    isoprenoid biosynthetic process    The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0045445    myoblast differentiation    The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
    GO:0043407    negative regulation of MAP kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0061179    negative regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:0010664    negative regulation of striated muscle cell apoptotic process    Any process that decreases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
    GO:0061045    negative regulation of wound healing    Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0010666    positive regulation of cardiac muscle cell apoptotic process    Any process that increases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0048643    positive regulation of skeletal muscle tissue development    Any process that activates, maintains or increases the rate of skeletal muscle tissue development.
    GO:0048661    positive regulation of smooth muscle cell proliferation    Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
    GO:0032874    positive regulation of stress-activated MAPK cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0006694    steroid biosynthetic process    The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
    GO:0016126    sterol biosynthetic process    The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
    GO:0006743    ubiquinone metabolic process    The chemical reactions and pathways involving ubiquinone, a lipid-soluble electron-transporting coenzyme.
    GO:0008542    visual learning    Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HMDH_HUMAN | P040351dq8 1dq9 1dqa 1hw8 1hw9 1hwi 1hwj 1hwk 1hwl 2q1l 2q6b 2q6c 2r4f 3cct 3ccw 3ccz 3cd0 3cd5 3cd7 3cda 3cdb

(-) Related Entries Specified in the PDB File

2q1l 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A COMPLEXED WITH 882
2q6b 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A COMPLEXED WITH HR2
2q6c 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A COMPLEXED WITH HR1
2r4f 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A COMPLEXED WITH RIE