1DQ8 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   COMPLEX OF THE CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE WITH HMG AND COA

Authors :   E. S. Istvan, M. Palnitkar, S. K. Buchanan, J. Deisenhofer

Date :   30 Dec 99 (Deposition) - 08 Mar 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Oxidoreductase, Cholesterol Biosynthesis, Hmg-Coa, Nadph (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. S. Istvan, M. Palnitkar, S. K. Buchanan, J. Deisenhofer
Crystal Structure Of The Catalytic Portion Of Human Hmg-Coa Reductase: Insights Into Regulation Of Activity And Catalysis.
Embo J. V. 19 819 2000
PubMed-ID: 10698924 | Reference-DOI: 10.1093/EMBOJ/19.5.819
(for further references see the PDB file header)

Molecule 1 - PROTEIN (HMG-COA REDUCTASE)
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.34
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	CATALYTIC PORTION
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 10)

No.	Name	Count	Type	Full Name
1	COA	4	Ligand/Ion	COENZYME A
2	DTT	2	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
3	MAH	4	Ligand/Ion	3-HYDROXY-3-METHYL-GLUTARIC ACID

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MAH A:200 , GLU A:559 , GLY A:560 , LEU A:562 , ALA A:564 , SER A:565 , ASN A:567 , ARG A:568 , ARG A:571 , VAL A:720 , LYS A:722 , HIS A:752 , SER A:852 , LEU A:853 , HOH A:2093 , TYR B:479 , GLU B:528	BINDING SITE FOR RESIDUE COA A 100
02	AC2	SOFTWARE	PRO A:477 , TYR A:479 , GLU A:528 , GLU B:559 , GLY B:560 , LEU B:562 , ALA B:564 , SER B:565 , ASN B:567 , ARG B:568 , ARG B:571 , VAL B:720 , LYS B:722 , HIS B:752 , SER B:852 , LEU B:853 , ALA B:856	BINDING SITE FOR RESIDUE COA B 101
03	AC3	SOFTWARE	GLU C:559 , GLY C:560 , CYS C:561 , LEU C:562 , ALA C:564 , SER C:565 , ASN C:567 , ARG C:568 , ARG C:571 , VAL C:720 , LYS C:722 , HIS C:752 , ASN C:755 , SER C:852 , LEU C:853 , ALA C:856 , LEU C:862 , SER C:865 , PRO D:477 , TYR D:479	BINDING SITE FOR RESIDUE COA C 102
04	AC4	SOFTWARE	TYR C:479 , GLU D:559 , GLY D:560 , LEU D:562 , ALA D:564 , SER D:565 , ASN D:567 , ARG D:568 , ARG D:571 , VAL D:720 , LYS D:722 , HIS D:752 , SER D:852 , LEU D:853 , ALA D:856 , LEU D:862 , HOH D:2274	BINDING SITE FOR RESIDUE COA D 103
05	AC5	SOFTWARE	COA A:100 , GLU A:559 , LYS A:735 , ALA A:751 , ASN A:755 , LEU A:853 , HOH A:2005 , ARG B:590 , SER B:684 , ASP B:690 , LYS B:691 , LYS B:692	BINDING SITE FOR RESIDUE MAH A 200
06	AC6	SOFTWARE	ARG A:590 , MET A:657 , SER A:684 , ASP A:690 , LYS A:691 , LYS A:692 , GLU B:559 , LYS B:735 , ALA B:751 , ASN B:755 , LEU B:853 , HOH B:2052	BINDING SITE FOR RESIDUE MAH B 201
07	AC7	SOFTWARE	GLU C:559 , LYS C:735 , ALA C:751 , ASN C:755 , LEU C:853 , ARG D:590 , SER D:684 , ASP D:690 , LYS D:691 , LYS D:692 , HOH D:2088 , HOH D:2266	BINDING SITE FOR RESIDUE MAH D 202
08	AC8	SOFTWARE	ARG C:590 , SER C:684 , ASP C:690 , LYS C:691 , LYS C:692 , GLU D:559 , LYS D:735 , ALA D:751 , ASN D:755 , LEU D:853 , HOH D:2090	BINDING SITE FOR RESIDUE MAH D 203
09	AC9	SOFTWARE	GLY C:765 , GLN C:766 , ASP C:767 , GLY C:806 , GLY C:807 , GLY C:808 , HOH C:2095 , HOH C:2117 , THR D:558 , GLU D:559	BINDING SITE FOR RESIDUE DTT C 301
10	BC1	SOFTWARE	GLY A:765 , GLN A:766 , ASP A:767 , GLY A:808 , THR B:558 , GLU B:559	BINDING SITE FOR RESIDUE DTT B 302

(no "SS Bond" information available for 1DQ8)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:542	-	Pro A:543
2	Cys A:688	-	Thr A:689
3	Gly B:542	-	Pro B:543
4	Cys B:688	-	Thr B:689
5	Gly C:542	-	Pro C:543
6	Cys C:688	-	Thr C:689
7	Gly D:542	-	Pro D:543
8	Cys D:688	-	Thr D:689

Asymmetric/Biological Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011954	I	638	V	HMDH_HUMAN	Polymorphism	5908	A/B/C/D	I	638	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (4, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HMG_COA_REDUCTASE_4	PS50065	Hydroxymethylglutaryl-coenzyme A reductases family profile.	HMDH_HUMAN	464-871	4	A:464-863 B:464-865 C:464-865 D:464-864
2	HMG_COA_REDUCTASE_1	PS00066	Hydroxymethylglutaryl-coenzyme A reductases signature 1.	HMDH_HUMAN	646-660	4	A:646-660 B:646-660 C:646-660 D:646-660
3	HMG_COA_REDUCTASE_2	PS00318	Hydroxymethylglutaryl-coenzyme A reductases signature 2.	HMDH_HUMAN	802-809	4	A:802-809 B:802-809 C:802-809 D:802-809
4	HMG_COA_REDUCTASE_3	PS01192	Hydroxymethylglutaryl-coenzyme A reductases signature 3.	HMDH_HUMAN	856-869	4	A:856-863 B:856-865 C:856-865 D:856-864

Asymmetric/Biological Unit (9, 33)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000287936	2a	ENSE00001378703	chr5:74632993-74633125	133	HMDH_HUMAN	-	0	0	-	-
1.5b	ENST00000287936	5b	ENSE00002182886	chr5:74638408-74638595	188	HMDH_HUMAN	1-55	55	0	-	-
1.6a	ENST00000287936	6a	ENSE00000753569	chr5:74639678-74639789	112	HMDH_HUMAN	56-93	38	0	-	-
1.7b	ENST00000287936	7b	ENSE00000753572	chr5:74640070-74640157	88	HMDH_HUMAN	93-122	30	0	-	-
1.8	ENST00000287936	8	ENSE00000753575	chr5:74641399-74641483	85	HMDH_HUMAN	122-150	29	0	-	-
1.9	ENST00000287936	9	ENSE00000753578	chr5:74643029-74643134	106	HMDH_HUMAN	151-186	36	0	-	-
1.10b	ENST00000287936	10b	ENSE00000753581	chr5:74645867-74645973	107	HMDH_HUMAN	186-221	36	0	-	-
1.11	ENST00000287936	11	ENSE00000753584	chr5:74646083-74646199	117	HMDH_HUMAN	222-260	39	0	-	-
1.12	ENST00000287936	12	ENSE00000753587	chr5:74646614-74646774	161	HMDH_HUMAN	261-314	54	0	-	-
1.13a	ENST00000287936	13a	ENSE00000753589	chr5:74646893-74647140	248	HMDH_HUMAN	314-397	84	0	-	-
1.13c	ENST00000287936	13c	ENSE00000753591	chr5:74647249-74647427	179	HMDH_HUMAN	397-456	60	1	A:439-451 - - -	13 - - -
1.14c	ENST00000287936	14c	ENSE00000753593	chr5:74650328-74650522	195	HMDH_HUMAN	457-521	65	4	A:460-521 B:461-521 C:464-521 D:458-521	62 61 58 64
1.15b	ENST00000287936	15b	ENSE00000753595	chr5:74650881-74651039	159	HMDH_HUMAN	522-574	53	4	A:522-574 B:522-574 C:522-574 D:522-574	53 53 53 53
1.15d	ENST00000287936	15d	ENSE00000753597	chr5:74651190-74651347	158	HMDH_HUMAN	575-627	53	4	A:575-627 B:575-627 C:575-627 D:575-627	53 53 53 53
1.16a	ENST00000287936	16a	ENSE00000753599	chr5:74652168-74652273	106	HMDH_HUMAN	627-662	36	4	A:627-662 B:627-662 C:627-662 D:627-662	36 36 36 36
1.17b	ENST00000287936	17b	ENSE00000753601	chr5:74654482-74654652	171	HMDH_HUMAN	663-719	57	4	A:663-719 B:663-719 C:663-719 D:663-719	57 57 57 57
1.18a	ENST00000287936	18a	ENSE00000753603	chr5:74654995-74655135	141	HMDH_HUMAN	720-766	47	4	A:720-766 B:720-766 C:720-766 D:720-766	47 47 47 47
1.19a	ENST00000287936	19a	ENSE00000753605	chr5:74655223-74655381	159	HMDH_HUMAN	767-819	53	4	A:767-819 B:767-819 C:767-819 D:767-819	53 53 53 53
1.20b	ENST00000287936	20b	ENSE00000753607	chr5:74655810-74655964	155	HMDH_HUMAN	820-871	52	4	A:820-863 B:820-865 C:820-865 D:820-864	44 46 46 45
1.21g	ENST00000287936	21g	ENSE00001859900	chr5:74656113-74657929	1817	HMDH_HUMAN	871-888	18	0	-	-

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:417
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:425
                                   448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858     
           HMDH_HUMAN   439 PREPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLV 863
               SCOP domains d1dq8a4 A:439        -586,A:704-863 Substrate-binding domain of HMG-CoA reductase                                                                   d1dq8a1 A:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1dq8a4 A:439-586,A:704-863 Substrate-binding domain of HMG-CoA reductase                                                                                        SCOP domains
               CATH domains -----------------------1dq8A01 A:462-536 HMGR, N-terminal domain                                  1dq8A02 A:537-585,A:704-862                      -1dq8A03 A:587-703  [code=3.30.70.420, no name defined]                                                               1dq8A02 A:537-585,A:704-862 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                 - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh..--------...hhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhh....eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------HMG_COA_REDUCTASE_4  PDB: A:464-863 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                             PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA_ PROSITE (2)
           Transcript 1 (1) Exon 1.13c        Exon 1.14c  PDB: A:460-521 UniProt: 457-521 [INCOMPLETE]         Exon 1.15b  PDB: A:522-574 UniProt: 522-574          Exon 1.15d  PDB: A:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: A:663-719 UniProt: 663-719              Exon 1.18a  PDB: A:720-766 UniProt: 720-766    Exon 1.19a  PDB: A:767-819 UniProt: 767-819          Exon 1.20b  PDB: A:820-863 UniProt: 820-871  Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: A:627-662          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1dq8 A 439 PREPRPNEECLQI--------KFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLV 863
                                   448  |      - |     468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858     
                                      451      460

Chain B from PDB  Type:PROTEIN  Length:405
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:405
                                   470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860     
           HMDH_HUMAN   461 FLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 865
               SCOP domains d1dq8b4 B:461-586,B:704-865 Substrate-binding domain of HMG-CoA reductase                                                     d1dq8b1 B:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1dq8b4 B:461-586,B:704-865 Substrate-binding domain of HMG-CoA reductase                                                                                          SCOP domains
               CATH domains -1dq8B01 B:462-536 HMGR, N-terminal domain                                  1dq8B02 B:537-585,B:704-865                      -1dq8B03 B:587-703  [code=3.30.70.420, no name defined]                                                               1dq8B02 B:537-585,B:704-865 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhh.......hhhhh.......eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---HMG_COA_REDUCTASE_4  PDB: B:464-865 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA_RE PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: B:461-521 UniProt: 457-521 [INCOMPLETE]     Exon 1.15b  PDB: B:522-574 UniProt: 522-574          Exon 1.15d  PDB: B:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: B:663-719 UniProt: 663-719              Exon 1.18a  PDB: B:720-766 UniProt: 720-766    Exon 1.19a  PDB: B:767-819 UniProt: 767-819          Exon 1.20b  PDB: B:820-865 UniProt: 820-871    Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: B:627-662          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1dq8 B 461 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 865
                                   470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860

Chain C from PDB  Type:PROTEIN  Length:402
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:402
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863  
           HMDH_HUMAN   464 DAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 865
               SCOP domains d1dq8c4 C:464-586,C:704-865 Substrate-binding domain of HMG-CoA reductase                                                  d1dq8c1 C:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1dq8c4 C:464-586,C:704-865 Substrate-binding domain of HMG-CoA reductase                                                                                          SCOP domains
               CATH domains 1dq8C01 C:464-536 HMGR, N-terminal domain                                1dq8C02 C:537-585,C:704-865                      -1dq8C03 C:587-703  [code=3.30.70.420, no name defined]                                                               1dq8C02 C:537-585,C:704-865 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HMG_COA_REDUCTASE_4  PDB: C:464-865 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA_RE PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: C:464-521 UniProt: 457-521 [INCOMPLETE]  Exon 1.15b  PDB: C:522-574 UniProt: 522-574          Exon 1.15d  PDB: C:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: C:663-719 UniProt: 663-719              Exon 1.18a  PDB: C:720-766 UniProt: 720-766    Exon 1.19a  PDB: C:767-819 UniProt: 767-819          Exon 1.20b  PDB: C:820-865 UniProt: 820-871    Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: C:627-662          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1dq8 C 464 DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKS 865
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863

Chain D from PDB  Type:PROTEIN  Length:407
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:407
                                   467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       
           HMDH_HUMAN   458 GAKFLSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVK 864
               SCOP domains d1dq8d4 D:458-586,D:704-864 Substrate-binding domain of HMG-CoA reductase                                                        d1dq8d1 D:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1dq8d4 D:458-586,D:704-864 Substrate-binding domain of HMG-CoA reductase                                                                                         SCOP domains
               CATH domains ----1dq8D01 D:462-536 HMGR, N-terminal domain                                  1dq8D02 D:537-585,D:704-864                      -1dq8D03 D:587-703  [code=3.30.70.420, no name defined]                                                               1dq8D02 D:537-585,D:704-864 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhh............................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------HMG_COA_REDUCTASE_4  PDB: D:464-864 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                              PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA_R PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: D:458-521 UniProt: 457-521 [INCOMPLETE]        Exon 1.15b  PDB: D:522-574 UniProt: 522-574          Exon 1.15d  PDB: D:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: D:663-719 UniProt: 663-719              Exon 1.18a  PDB: D:720-766 UniProt: 720-766    Exon 1.19a  PDB: D:767-819 UniProt: 767-819          Exon 1.20b  PDB: D:820-864 UniProt: 820-871   Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: D:627-662          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1dq8 D 458 GAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVK 864
                                   467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: NAD-binding domain of HMG-CoA reductase (20)

Family: NAD-binding domain of HMG-CoA reductase (20)

Protein domain: NAD-binding domain of HMG-CoA reductase (20)

Human (Homo sapiens) [TaxId: 9606] (9)

1a	d1dq8a1	A:587-703
1b	d1dq8b1	B:587-703
1c	d1dq8c1	C:587-703
1d	d1dq8d1	D:587-703

Fold: Substrate-binding domain of HMG-CoA reductase (20)

Superfamily: Substrate-binding domain of HMG-CoA reductase (20)

Family: Substrate-binding domain of HMG-CoA reductase (20)

Protein domain: Substrate-binding domain of HMG-CoA reductase (20)

Human (Homo sapiens) [TaxId: 9606] (9)

2a	d1dq8a4	A:439-586,A:704-863
2b	d1dq8b4	B:461-586,B:704-865
2c	d1dq8c4	C:464-586,C:704-865
2d	d1dq8d4	D:458-586,D:704-864

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.420, no name defined] (27)

Human (Homo sapiens) (22)

1a	1dq8A03	A:587-703
1b	1dq8B03	B:587-703
1c	1dq8C03	C:587-703
1d	1dq8D03	D:587-703

Architecture: Alpha-Beta Complex (3881)

Topology: 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 (27)

Homologous Superfamily: 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 (27)

Human (Homo sapiens) (22)

2a	1dq8B02	B:537-585,B:704-865
2b	1dq8C02	C:537-585,C:704-865
2c	1dq8D02	D:537-585,D:704-864
2d	1dq8A02	A:537-585,A:704-862

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: HMGR, N-terminal domain (22)

Homologous Superfamily: HMGR, N-terminal domain (22)

Human (Homo sapiens) (22)

3a	1dq8C01	C:464-536
3b	1dq8A01	A:462-536
3c	1dq8B01	B:462-536
3d	1dq8D01	D:462-536

(no "Pfam Domain" information available for 1DQ8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (HMDH_HUMAN | P04035)

molecular function
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0070402	NADPH binding	Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0050662	coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH.
	GO:0042282	hydroxymethylglutaryl-CoA reductase activity	Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADH.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0051721	protein phosphatase 2A binding	Interacting selectively and non-covalently with the enzyme protein phosphatase 2A.
biological process
	GO:0007568	aging	A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
	GO:0006695	cholesterol biosynthetic process	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0008203	cholesterol metabolic process	The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
	GO:0015936	coenzyme A metabolic process	The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0045445	myoblast differentiation	The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
	GO:0043407	negative regulation of MAP kinase activity	Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0061179	negative regulation of insulin secretion involved in cellular response to glucose stimulus	Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
	GO:0010664	negative regulation of striated muscle cell apoptotic process	Any process that decreases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
	GO:0061045	negative regulation of wound healing	Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0070374	positive regulation of ERK1 and ERK2 cascade	Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
	GO:0010666	positive regulation of cardiac muscle cell apoptotic process	Any process that increases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
	GO:0008284	positive regulation of cell proliferation	Any process that activates or increases the rate or extent of cell proliferation.
	GO:0048643	positive regulation of skeletal muscle tissue development	Any process that activates, maintains or increases the rate of skeletal muscle tissue development.
	GO:0048661	positive regulation of smooth muscle cell proliferation	Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
	GO:0032874	positive regulation of stress-activated MAPK cascade	Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:0045471	response to ethanol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
	GO:0007584	response to nutrient	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
	GO:0006694	steroid biosynthetic process	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
	GO:0008202	steroid metabolic process	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
	GO:0016126	sterol biosynthetic process	The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
	GO:0006743	ubiquinone metabolic process	The chemical reactions and pathways involving ubiquinone, a lipid-soluble electron-transporting coenzyme.
	GO:0008542	visual learning	Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005778	peroxisomal membrane	The lipid bilayer surrounding a peroxisome.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		COA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DTT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Cys A:688 - Thr A:689	[ RasMol ]
		Cys B:688 - Thr B:689	[ RasMol ]
		Cys C:688 - Thr C:689	[ RasMol ]
		Cys D:688 - Thr D:689	[ RasMol ]
		Gly A:542 - Pro A:543	[ RasMol ]
		Gly B:542 - Pro B:543	[ RasMol ]
		Gly C:542 - Pro C:543	[ RasMol ]
		Gly D:542 - Pro D:543	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1dq8
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	HMDH_HUMAN \| P04035
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.1.1.34
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	HMDH_HUMAN \| P04035
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Related Entries Specified in the PDB File" available for 1DQ8)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (4, 16)

Exons (9, 33)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (3, 12)

Pfam Domains (0, 0)

Gene Ontology (43, 43)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File