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(-) Description

Title :  ROOM TEMPRETURE CRYSTAL STRUCTURE OF STEROL CARRIER PROTEIN-2 LIKE-2
 
Authors :  D. H. Dyer, Q. Lan, K. T. Forest
Date :  15 Nov 07  (Deposition) - 01 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha/Beta Protein, Lipid Carrier, Sterol Carrier Protein, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Dyer, V. Wessely, K. T. Forest, Q. Lan
Three-Dimensional Structure/Function Analysis Of Scp-2-Like2 Reveals Differences Among Scp-2 Family Members.
J. Lipid Res. V. 49 644 2008
PubMed-ID: 18084051  |  Reference-DOI: 10.1194/JLR.M700460-JLR200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - STEROL CARRIER PROTEIN 2-LIKE 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PGEX
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Common: YELLOW FEVER MOSQUITO
    Organism Scientific: AEDES AEGYPTI
    Organism Taxid: 7159

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1PLM3Ligand/IonPALMITIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:13 , ARG A:23 , LYS A:24 , VAL A:25 , PHE A:29 , LEU A:31 , VAL A:44 , PLM A:302 , HOH A:304BINDING SITE FOR RESIDUE PLM A 300
2AC2SOFTWAREARG B:13 , ARG B:23 , LYS B:24 , VAL B:25 , LEU B:101 , HOH B:337BINDING SITE FOR RESIDUE PLM B 301
3AC3SOFTWAREARG A:13 , MET A:70 , SER A:74 , LEU A:91 , ALA A:98 , ILE A:105 , PLM A:300 , HOH A:330BINDING SITE FOR RESIDUE PLM A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BDQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BDQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BDQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BDQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3BDQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q0GY13_AEDAE | Q0GY13 from UniProtKB/TrEMBL  Length:105

    Alignment length:108
                               1                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97        
         Q0GY13_AEDAE     - ---MSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh...........eeeeeeee..eeeeeeee....eeee.......eeeeeehhhhhhhhh...hhhhhhhh..eeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3bdq A  -2 GIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
                                     7        17        27        37        47        57        67        77        87        97        


Chain B from PDB  Type:PROTEIN  Length:110
 aligned with Q0GY13_AEDAE | Q0GY13 from UniProtKB/TrEMBL  Length:105

    Alignment length:110
                                 1                                                                                                        
                                 |   5        15        25        35        45        55        65        75        85        95       105
         Q0GY13_AEDAE     - -----MSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh..........eeeeeeee..eeeeeeee....eeee.......eeeeeehhhhhhhhh...hhhhhhhh..eeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3bdq B  -4 SPGIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
                                     5        15        25        35        45        55        65        75        85        95       105
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BDQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3BDQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BDQ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3BDQ)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0GY13_AEDAE | Q0GY13: 2nbm 2nbn 2qzt

(-) Related Entries Specified in the PDB File

2qzt SAME PROTEIN, DATA COLLECTED AT -180