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(-) Description

Title :  CRYSTAL STRUCTURE OF STEROL CARRIER PROTEIN 2 LIKE 2 (SCP2-L2) FROM AEDES AEGYPTI
 
Authors :  D. H. Dyer, Q. Lan, K. T. Forest
Date :  17 Aug 07  (Deposition) - 11 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sterol Carrier, Mosquito, Fatty Acid, Palmitic Acid, Cholesterol, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Dyer, V. Wessely, K. T. Forest, Q. Lan
Three-Dimensional Structure/Function Analysis Of Scp-2-Like2 Reveals Differences Among Scp-2 Family Members.
J. Lipid Res. V. 49 644 2008
PubMed-ID: 18084051  |  Reference-DOI: 10.1194/JLR.M700460-JLR200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - STEROL CARRIER PROTEIN 2-LIKE 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PGEX-4T-2
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: STEROL CARRIER PROTEIN 2 LIKE 2
    Organism Common: YELLOW FEVER MOSQUITO
    Organism Scientific: AEDES AEGYPTI
    Organism Taxid: 7159

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1PLM3Ligand/IonPALMITIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:23 , LYS A:24 , PHE A:29 , HOH A:314BINDING SITE FOR RESIDUE PLM A 300
2AC2SOFTWAREARG B:13 , ARG B:23 , LYS B:24 , ILE B:105 , HOH B:367 , HOH B:369BINDING SITE FOR RESIDUE PLM B 301
3AC3SOFTWAREILE A:6 , ARG A:13 , MET A:70 , SER A:74 , LEU A:91 , ILE A:105 , HOH A:365BINDING SITE FOR RESIDUE PLM A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QZT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QZT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QZT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QZT)

(-) Exons   (0, 0)

(no "Exon" information available for 2QZT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q0GY13_AEDAE | Q0GY13 from UniProtKB/TrEMBL  Length:105

    Alignment length:108
                               1                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97        
         Q0GY13_AEDAE     - ---MSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh...........eeeeeeee..eeeeeeee....eeee.......eeeeeehhhhhhhhh...hhhhhhhh..eeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2qzt A  -2 GIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
                                     7        17        27        37        47        57        67        77        87        97        


Chain B from PDB  Type:PROTEIN  Length:110
 aligned with Q0GY13_AEDAE | Q0GY13 from UniProtKB/TrEMBL  Length:105

    Alignment length:110
                                 1                                                                                                        
                                 |   5        15        25        35        45        55        65        75        85        95       105
         Q0GY13_AEDAE     - -----MSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------SCP2-2qztB01 B:7-105                                                                                Pfam domains (1)
           Pfam domains (2) -----------SCP2-2qztB02 B:7-105                                                                                Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...........eeeeeee.....eeeeee....eeee.......eeeeeehhhhhhhhh...hhhhhhhh..eeeeehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2qzt B  -4 SPGIRMSVETIIERIKARVGAVDPNGPRKVLGVFQLNIKTASGVEQWIVDLKQLKVDQGVFASPDVTVTVGLEDMLAISGKTLTVGDALKQGKIELSGDADLAAKLAEVI 105
                                     5        15        25        35        45        55        65        75        85        95       105
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QZT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QZT)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: SCP2 (6)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QZT)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0GY13_AEDAE | Q0GY13: 2nbm 2nbn 3bdq

(-) Related Entries Specified in the PDB File

1pz4 MOSQUITO SCP2