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(-) Description

Title :  STRUCTURE OF ACTIVE WILD-TYPE PREVOTELLA INTERMEDIA INTERPAIN A CYSTEINE PROTEASE
 
Authors :  N. Mallorqui-Fernandez, S. P. Manandhar, G. Mallorqui-Fernandez, I. K. Wawrzonek, T. Kantyka, M. Sola, I. B. Thogersen, J. J. Enghild, J. Po F. X. Gomis-Ruth
Date :  09 Nov 07  (Deposition) - 20 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Prevotella Intermedia, Zymogen Activation, Cysteine Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Mallorqui-Fernandez, S. P. Manandhar, G. Mallorqui-Fernandez, I. Uson, K. Wawrzonek, T. Kantyka, M. Sola, I. B. Thogersen, J. J. Enghild, J. Potempa, F. X. Gomis-Ruth
A New Autocatalytic Activation Mechanism For Cysteine Proteases Revealed By Prevotella Intermedia Interpain A
J. Biol. Chem. V. 283 2871 2008
PubMed-ID: 17993455  |  Reference-DOI: 10.1074/JBC.M708481200

(-) Compounds

Molecule 1 - INTERPAIN A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D(+)
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 156-403
    Gene: PIN0048
    Organism Scientific: PREVOTELLA INTERMEDIA
    Organism Taxid: 28131

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BBA)

(-) Sites  (0, 0)

(no "Site" information available for 3BBA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BBA)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Met A:136 -Pro A:137
2Tyr A:168 -Pro A:169
3Tyr A:180 -Pro A:181
4Met B:136 -Pro B:137
5Tyr B:168 -Pro B:169
6Tyr B:180 -Pro B:181

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BBA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BBA)

(-) Exons   (0, 0)

(no "Exon" information available for 3BBA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with A9J7N5_PREIN | A9J7N5 from UniProtKB/TrEMBL  Length:868

    Alignment length:246
                                   165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395      
         A9J7N5_PREIN   156 VIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPNTKKGRLITGCVATATAQALNYFKYPVRGIGSHTVHYPANDPSGVAISADFGNTTYDWANMKDDYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRADYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYG 401
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........................................hhhhhhhhhhhhhhh........eeeee.......eeeee.......hhhhh........hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhh...eeeeeee.......eeeeeeeeee.....eeee........eee.....hhhhh....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bba A 112 VIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPKTKKGRLITGCVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGTAISADFGNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYG 357
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351      


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with A9J7N5_PREIN | A9J7N5 from UniProtKB/TrEMBL  Length:868

    Alignment length:252
                                   165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405  
         A9J7N5_PREIN   156 VIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPNTKKGRLITGCVATATAQALNYFKYPVRGIGSHTVHYPANDPSGVAISADFGNTTYDWANMKDDYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRADYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYGKPKDLE 407
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................ee..ee...hhhhhhhhhhhhhh.........eeeee.......eeeeehhhhh..hhhhh........hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhh...eeeeeee.......eeeeeeeeee.....eeee........eee.....hhhhh....eeeeeee......--.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bba B 112 VIKPDPSKYAAEVSTLLTTTWGQQMPYNKLLPKTKKGRLITGCVATATAQVLNYFKYPVRGIGSHTVHYPANDPSGTAISADFGNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVIDGYNKAGLVSVNWGWNGDVDGYYKIDLLNPGNMYSFTAEQDMVRGVYGKP--LE 361
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       | -| 
                                                                                                                                                                                                                                                                                 359  | 
                                                                                                                                                                                                                                                                                    360
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BBA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3BBA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BBA)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A9J7N5_PREIN | A9J7N5)
molecular function
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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  Cis Peptide Bonds
    Met A:136 - Pro A:137   [ RasMol ]  
    Met B:136 - Pro B:137   [ RasMol ]  
    Tyr A:168 - Pro A:169   [ RasMol ]  
    Tyr A:180 - Pro A:181   [ RasMol ]  
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    Tyr B:180 - Pro B:181   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A9J7N5_PREIN | A9J7N5: 3bb7

(-) Related Entries Specified in the PDB File

3bb7 THE PRESENT ENTRY IS THE MATURE ENZYME AND THE RELATED ONE A MAJOR FRAGMENT OF THE ZYMOGEN (C154A MUTANT)