3B6J - JenaLib

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:10 , MET A:11 , TYR A:12 , GLY A:13 , HIS A:14 , ILE A:15 , PRO A:77 , THR A:78 , ARG A:79 , PHE A:80 , GLY A:81 , SER A:113 , THR A:114 , GLY A:115 , THR A:116 , GLY A:117 , GLY A:118 , NAD A:201 , 15P A:202 , HOH A:256 , HOH A:257 , HOH A:369 , ASP B:92 , HIS B:133	BINDING SITE FOR RESIDUE FMN A 200
02	AC2	SOFTWARE	ASP A:92 , HIS A:133 , SER B:10 , MET B:11 , TYR B:12 , GLY B:13 , HIS B:14 , ILE B:15 , THR B:78 , ARG B:79 , PHE B:80 , SER B:113 , THR B:114 , GLY B:115 , THR B:116 , GLY B:117 , GLY B:118 , NAD B:201 , 15P B:203 , HOH B:218 , HOH B:269 , HOH B:270 , HOH B:272	BINDING SITE FOR RESIDUE FMN B 200
03	AC3	SOFTWARE	TYR A:12 , MET A:43 , ALA A:51 , GLN A:86 , ASP A:169 , GLY A:170 , FMN A:200 , 15P A:202 , HOH A:205 , HOH A:258 , HOH A:259 , HOH A:260 , HOH A:261 , HOH A:319 , HOH A:320 , HOH A:350 , HOH A:351 , HOH A:358 , ASP B:92 , GLN B:93 , GLY B:95 , 15P B:205 , HOH B:220 , HOH B:229	BINDING SITE FOR RESIDUE NAD A 201
04	AC4	SOFTWARE	ASP A:92 , GLN A:93 , GLY A:95 , HOH A:214 , TYR B:12 , MET B:43 , ALA B:51 , ASP B:169 , GLY B:170 , FMN B:200 , 15P B:203 , HOH B:231 , HOH B:252 , HOH B:257 , HOH B:271 , HOH B:272 , HOH B:308 , HOH B:309 , HOH B:310 , HOH B:350 , HOH B:381 , HOH B:385 , HOH B:386	BINDING SITE FOR RESIDUE NAD B 201
05	AC5	SOFTWARE	LYS A:54 , THR A:57 , HOH A:242 , ALA B:144 , ALA B:145 , GLN B:146 , GLU B:147 , SER B:180 , TYR B:184 , GLU B:187	BINDING SITE FOR RESIDUE AMP B 202
06	AC6	SOFTWARE	PHE A:80 , TYR A:143 , FMN A:200 , NAD A:201 , HOH A:350 , HOH A:351 , HOH A:357 , GLY B:95 , TRP B:98 , HIS B:133	BINDING SITE FOR RESIDUE 15P A 202
07	AC7	SOFTWARE	GLY A:95 , TRP A:98 , HIS A:133 , PHE B:80 , TYR B:143 , FMN B:200 , NAD B:201 , HOH B:381	BINDING SITE FOR RESIDUE 15P B 203
08	AC8	SOFTWARE	ALA A:144 , GLN A:146 , TRP B:98 , ALA B:99 , SER B:100 , GLY B:101	BINDING SITE FOR RESIDUE 15P B 204
09	AC9	SOFTWARE	TRP A:98 , ALA A:99 , SER A:100 , GLY A:101 , TYR A:104 , GLN B:146 , PHE B:149	BINDING SITE FOR RESIDUE 15P A 203
10	BC1	SOFTWARE	GLU A:49 , LYS A:50 , ALA A:51 , GLY A:52 , GLY A:53 , GLY A:105 , LEU A:196 , ASN A:197 , NAD A:201 , TYR B:188 , LEU B:192 , LYS B:195	BINDING SITE FOR RESIDUE 15P B 205
11	BC2	SOFTWARE	TYR A:188 , LEU A:192 , LYS A:195 , LEU B:196 , ASN B:197	BINDING SITE FOR RESIDUE 15P A 204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:197
 aligned with NQOR_ECOLI | P0A8G6 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
           NQOR_ECOLI     2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
               SCOP domains d3b6ja_ A: automated matches                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhh...........hhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FLAVODOXIN_LIKE  PDB: A:4-189 UniProt: 4-189                                                                                                                                              --------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b6j A   2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with NQOR_ECOLI | P0A8G6 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
           NQOR_ECOLI     2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
               SCOP domains d3b6jb_ B: automated matches                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhh..........hhhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhh..ee......hhhhhh............eee.........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FLAVODOXIN_LIKE  PDB: B:4-189 UniProt: 4-189                                                                                                                                              --------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b6j B   2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NQOR_ECOLI | P0A8G6)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (11, 11)