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(-) Description

Title :  WRBA IN COMPLEX WITH FMN UNDER CRYSTALLIZATION CONDITIONS OF WRBA-FMN-BQ STRUCTURE (4YQE)
 
Authors :  O. Degtjarik, J. Brynda, O. Ettrichova, I. Kuta Smatanova, J. Carey, R
Date :  29 Nov 15  (Deposition) - 25 May 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Flavin Mononucleotide, Nad(P)H Dehydrogenase (Quinone), Oxidation- Reduction, Protein Binding, Repressor Proteins, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Degtjarik, J. Brynda, O. Ettrichova, M. Kuty, D. Sinha, I. Kuta Smatanova, J. Carey, R. Ettrich, D. Reha
Quantum Calculations Indicate Effective Electron Transfer Between Fmn And Benzoquinone In A New Crystal Structure Of Escherichia Coli Wrba.
J. Phys. Chem. B V. 120 4867 2016
PubMed-ID: 27183467  |  Reference-DOI: 10.1021/ACS.JPCB.5B11958

(-) Compounds

Molecule 1 - NAD(P)H DEHYDROGENASE (QUINONE)
    Chains: A, B
    EC Number: 1.6.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: WRBA, B1004, JW0989
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2MHO2Mod. Amino AcidS-OXYMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
2MHO4Mod. Amino AcidS-OXYMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:9 , MHO A:10 , TYR A:11 , GLY A:12 , HIS A:13 , ILE A:14 , PRO A:76 , THR A:77 , ARG A:78 , PHE A:79 , SER A:112 , THR A:113 , GLY A:114 , THR A:115 , GLY A:116 , GLY A:117 , HOH A:305 , HOH A:337 , ASP B:91 , HIS B:132binding site for residue FMN A 201
2AC2SOFTWAREASP A:91 , HIS A:132 , SER B:9 , MHO B:10 , TYR B:11 , GLY B:12 , HIS B:13 , ILE B:14 , PRO B:76 , THR B:77 , ARG B:78 , PHE B:79 , SER B:112 , THR B:113 , GLY B:114 , THR B:115 , GLY B:116 , GLY B:117 , ALA B:165 , HOH B:306 , HOH B:326 , HOH B:333binding site for residue FMN B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F12)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F12)

(-) Exons   (0, 0)

(no "Exon" information available for 5F12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhh..........hhhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhhhh..ee......hhhhh......................hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f12 A   1 AKVLVLYYSmYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 ||    163       173       183       193    
                                    10-MHO                                                                                                                                       152|                                         
                                                                                                                                                                                  156                                         


Chain B from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhh..........hhhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhhh.....eeeeeeee....hhhhhhhhhhhhhhhh..ee..hhhhh.......eee.........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f12 B   1 AKVLVLYYSmYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 197
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   ||  160       170       180       190       
                                    10-MHO                                                                                                                               144|                                          
                                                                                                                                                                          155
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F12)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F12)

(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQOR_ECOLI | P0A8G6: 2r96 2r97 2rg1 3b6i 3b6j 3b6k 3b6m 3zho 4yqe

(-) Related Entries Specified in the PDB File

1rg1 WRBA APOPROTEIN
3zho WRBA IN COMPLEX WITH FMN AT 1.2 A RESOLUTION
4yqe COMPLEX WITH FMN AND BQ