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(-) Description

Title :  PERRHENATE BINDING TO A11C/R153C MODA MUTANT
 
Authors :  C. He, B. P. Aryal, P. Brugarolas
Date :  04 Apr 11  (Deposition) - 01 Feb 12  (Release) - 01 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Molybdate Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. P. Aryal, P. Brugarolas, C. He
Binding Of Reo(4) (-) With An Engineered Moo (4) (2-)-Binding Protein: Towards A New Approach In Radiopharmaceutical Applications.
J. Biol. Inorg. Chem. V. 17 97 2012
PubMed-ID: 21861186  |  Reference-DOI: 10.1007/S00775-011-0833-4

(-) Compounds

Molecule 1 - MOLYBDATE-BINDING PERIPLASMIC PROTEIN
    Chains: A, B, C
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1REO3Ligand/IonPERRHENATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1REO1Ligand/IonPERRHENATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1REO1Ligand/IonPERRHENATE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1REO1Ligand/IonPERRHENATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:10 , CYS A:11 , SER A:12 , SER A:39 , ALA A:58 , PRO A:124 , ALA A:125 , ASP A:151 , VAL A:152 , TYR A:170BINDING SITE FOR RESIDUE REO A 301
2AC2SOFTWAREALA B:10 , CYS B:11 , SER B:12 , SER B:38 , SER B:39 , ALA B:58 , VAL B:123 , PRO B:124 , ALA B:125 , ASP B:151 , VAL B:152 , TYR B:170BINDING SITE FOR RESIDUE REO B 301
3AC3SOFTWAREALA C:10 , CYS C:11 , SER C:12 , SER C:38 , SER C:39 , VAL C:123 , PRO C:124 , ALA C:125 , ASP C:151 , VAL C:152 , TYR C:170BINDING SITE FOR RESIDUE REO C 301

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:11 -A:153
2B:11 -B:153

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3AXF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3AXF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3AXF)

(-) Exons   (0, 0)

(no "Exon" information available for 3AXF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with MODA_ECOLI | P37329 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:231
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 
           MODA_ECOLI    27 GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 257
               SCOP domains d3axfa_ A: automated matches                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhh.....eee..hhhhhhhhhhh...hhhhheeeeee.eeeeee..............hhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhh...eeeeee.hhhhh..eeeeeee.....hhhhhhhhhhh.hhhhhhhhhhh..ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3axf A   3 GKITVFAACSLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVCGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 233
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with MODA_ECOLI | P37329 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:231
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 
           MODA_ECOLI    27 GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 257
               SCOP domains d3axfb_ B: automated matches                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhh....eee..hhhhhhhhhhh...hhhhheeeeee.eeeeee..............hhhhhhh...eeee....hhhhhhhhhhhhhh.hhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhhh..eeeeee.hhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3axf B   3 GKITVFAACSLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVCGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 233
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 


Chain C from PDB  Type:PROTEIN  Length:231
 aligned with MODA_ECOLI | P37329 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:231
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 
           MODA_ECOLI    27 GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 257
               SCOP domains d3axfc_ C: automated matches                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eee...hhhhhhhhhhhhhhhh..ee..ee.hhhhhhhhhhhh....eee...hhhhhhhhhh...hhhhheeeeee.eeeeee..............hhhhhhh...eeee....hhhhhhhhhhhhhh.hhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhhh..eeeeee.hhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhh....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3axf C   3 GKITVFAACSLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVCGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK 233
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AXF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AXF)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (MODA_ECOLI | P37329)
molecular function
    GO:0015412    ATPase-coupled molybdate transmembrane transporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + molybdate(out) = ADP + phosphate + molybdate(in).
biological process
    GO:0015689    molybdate ion transport    The directed movement of molybdate (MoO4 2-) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Molybdate is the bivalent anion derived from molybdic acid.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MODA_ECOLI | P37329: 1amf 1wod 3r26 4xxu

(-) Related Entries Specified in the PDB File

3r26 PERRHENATE BINDING TO MOLYBDATE BINDING PROTEIN