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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS CELLULAR RECEPTOR SLAM (FORM I, MV-H-SLAM(N102H/R108Y) FUSION)
 
Authors :  T. Hashiguchi, T. Ose, M. Kubota, N. Maita, J. Kamishikiryo, K. Maenaka
Date :  09 Aug 10  (Deposition) - 12 Jan 11  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Biol. Unit 2:  A  (6x)
Keywords :  Viral Protein-Receptor Complex, Six-Bladed Beta-Propeller Fold, Immunoglobulin Fold, Beta-Sandwich, Viral Protein-Membrane Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Hashiguchi, T. Ose, M. Kubota, N. Maita, J. Kamishikiryo, K. Maenaka, Y. Yanagi
Structure Of The Measles Virus Hemagglutinin Bound To Its Cellular Receptor Slam
Nat. Struct. Mol. Biol. V. 18 135 2011
PubMed-ID: 21217702  |  Reference-DOI: 10.1038/NSMB.1969

(-) Compounds

Molecule 1 - HEMAGGLUTININ, CDW150
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293SGNTI(-)
    Expression System PlasmidPCA7
    Expression System Taxid9606
    Expression System Vector TypePLASMID
    FragmentHEMAGGLUTININ HEAD DOMAIN/CD150 V DOMAIN, UNP REISUDES 30- 140
    GeneHEMAGGLUTININ, CD150
    MutationYES
    Organism CommonCOTTON-TOP TAMARIN
    Organism ScientificMEASLES VIRUS, SYNTHETIC CONSTRUCT, SAGUINUS OEDIPUS
    Organism Taxid11234, 32630, 9490
    Other DetailsMV-H/SLAM FUSION PROTEIN
    StrainEDMONSTON B, B95A
    SynonymCD150, SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A
Biological Unit 2 (6x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:200BINDING SITE FOR RESIDUE NAG A 801
2AC2SOFTWAREASN A:215 , GLY A:592 , HIS A:593BINDING SITE FOR RESIDUE NAG A 901

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:32 -A:132
2A:188 -A:606
3A:287 -A:300
4A:381 -A:494
5A:386 -A:394
6A:570 -A:579

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ALW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ALW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ALW)

(-) Exons   (0, 0)

(no "Exon" information available for 3ALW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:510
 aligned with E2RZS2_9MONO | E2RZS2 from UniProtKB/TrEMBL  Length:617

    Alignment length:525
                                                                                                                                                                                                                                                                                                                                                                                                                                                               607              617                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                            606  |   613     614  |                                                                                      
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597        |- |     | -     |  |-         -         -         -         -         -         -         -         -     
         E2RZS2_9MONO   188 CSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSC--TVTREDG-------TNRR--------------------------------------------------------------------------------------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eehhhhhhhh........eeeee..eeeeee.....------------...eeeeeeeee.......eeeeeeeeee...---...eeeee..eeeeee....eee............eeeeee.......eee...ee.....eeeee....eeeee..eee..eeeee..hhhhhhhhhhhhh...hhhhhh.....hhhhh...eeeeeeee........eeeeee...........eeee.....eeeeee.........eeeeee.....eeeeee.ee..........ee..........eeee...ee.......ee.eeee......eeee............eeee....eeeeeeeeeeeee..eeeeeeeeeeee.....eeeeeeeeeeeee...eee.......ee...............eeeeeee........eeeeee..............eee.hhhh.eee........eeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3alw A 188 CSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKP------------SMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVS---SNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSCCPKIVQQLGSDVLLPLTHERINTSMNKSIHIVVTMAKSLENSVENKIVSLDPSEAGPPRYLKDRYRFYLEHLSLAIYESTKKDEGWYFMTLEKNISVQRFCLHLKL 137
                                   197       207       217       227       237         -  |    257       267       277   |   287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597        32        42        52        62        72        82        92       102       112       122       132     
                                                                           237          250                            281 285                                                                                                                                                                                                                                                                                                                              606|                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                              32                                                                                                         

Chain A from PDB  Type:PROTEIN  Length:510
 aligned with HEMA_MEASE | P08362 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:525
                                                                                                                                                                                                                                                                                                                                                                                                                                                               607              617                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                            606  |   613     614  |                                                                                      
                                   197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597        |- |     | -     |  |-         -         -         -         -         -         -         -         -     
           HEMA_MEASE   188 CSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVSNDLSNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFNVPIKEAGEDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMEGMGVSC--TVTREDG-------TNRR--------------------------------------------------------------------------------------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eehhhhhhhh........eeeee..eeeeee.....------------...eeeeeeeee.......eeeeeeeeee...---...eeeee..eeeeee....eee............eeeeee.......eee...ee.....eeeee....eeeee..eee..eeeee..hhhhhhhhhhhhh...hhhhhh.....hhhhh...eeeeeeee........eeeeee...........eeee.....eeeeee.........eeeeee.....eeeeee.ee..........ee..........eeee...ee.......ee.eeee......eeee............eeee....eeeeeeeeeeeee..eeeeeeeeeeee.....eeeeeeeeeeeee...eee.......ee...............eeeeeee........eeeeee..............eee.hhhh.eee........eeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3alw A 188 CSGPTTIRGQFSNMSLSLLDLYLGRGYNVSSIVTMTSQGMYGGTYLVEKP------------SMYRVFEVGVIRNPGLGAPVFHMTNYLEQPVS---SNCMVALGELKLAALCHGEDSITIPYQGSGKGVSFQLVKLGVWKSPTDMQSWVPLSTDDPVIDRLYLSSHRGVIADNQAKWAVPTTRTDDKLRMETCFQQACKGKIQALCENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVYSPSRSFSYFYPFRLPIKGVPIELQVECFTWDQKLWCRHFCVLADSESGGHITHSGMVGMGVSCCPKIVQQLGSDVLLPLTHERINTSMNKSIHIVVTMAKSLENSVENKIVSLDPSEAGPPRYLKDRYRFYLEHLSLAIYESTKKDEGWYFMTLEKNISVQRFCLHLKL 137
                                   197       207       217       227       237         -  |    257       267       277   |   287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597        32        42        52        62        72        82        92       102       112       122       132     
                                                                           237          250                            281 285                                                                                                                                                                                                                                                                                                                              606|                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                              32                                                                                                         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ALW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ALW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ALW)

(-) Gene Ontology  (15, 28)

Asymmetric Unit(hide GO term definitions)
Chain A   (E2RZS2_9MONO | E2RZS2)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain A   (HEMA_MEASE | P08362)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E2RZS2_9MONO | E2RZS23alx 3alz
        HEMA_MEASE | P083622rkc 2zb5 2zb6 3alx 3alz 3inb
UniProtKB/TrEMBL
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(-) Related Entries Specified in the PDB File

3alx MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS CELLULAR RECEPTOR SLAM (FORM II, SLAM(N692H/R698Y)-MV-H(L482R) FUSION)
3alz MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS CELLULAR RECEPTOR SLAM (FORM I)